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arraytools
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BRB ArrayTool question
Channel Count Trouble
ArrayTools
8.0 years ago
affaid_tyj
▴ 10
0
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4
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1.1k
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error preProcessGeneST ArrayTools (R 2.15.2, BioC 2.11)
Annotation
GO
ArrayTools
Annotation
GO
ArrayTools
updated 11.3 years ago by
James W. MacDonald
65k • written 11.3 years ago by
José LÓPEZ
▴ 110
0
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2
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824
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recipe for heatmap
affy
ArrayTools
affy
ArrayTools
updated 19.7 years ago by
Laura Hollins
▴ 30 • written 19.7 years ago by
Marc Salit
▴ 80
0
votes
0
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758
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qaGeneST bug
ArrayTools
ArrayTools
14.5 years ago
Dick Beyer
★ 1.4k
4 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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