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arrayweights
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16
votes
0
replies
3.7k
views
simultaneous use of robust and weighting methods in limma
limma
robust
arrayWeights
10.4 years ago • updated 7.9 years ago
Gordon Smyth
50k
10
votes
4
replies
2.1k
views
limma-trend with random effects and/or array weights
limma-trend
duplicatecorrelation
arrayweights
limma
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
maltethodberg
▴ 170
7
votes
2
replies
2.2k
views
Appropriate explanation of the methodology behind arrayWeights function from limma R package
limma
arrayWeights
variance
sampleQuality
microarray
updated 8.5 years ago by
Ryan C. Thompson
★ 7.9k • written 8.5 years ago by
svlachavas
▴ 830
4
votes
8
replies
1.7k
views
Combination of duplicateCorrelation with arrayWeights to increase power for DE detection in multilevel experiments
limma
duplicatecorrelation
arrayweights
microarray
updated 8.5 years ago by
Gordon Smyth
50k • written 8.5 years ago by
svlachavas
▴ 830
4
votes
1
reply
1.3k
views
simultaneous use of robust and weighting methods in limma.
limma
arrayweights
robust
updated 9.4 years ago by
Gordon Smyth
50k • written 10.4 years ago by
Richard Friedman
▴ 80
4
votes
5
replies
1.6k
views
limma: genas + arrayweights = OK?
limma
genas
arrayweights
updated 8.6 years ago by
Gordon Smyth
50k • written 8.6 years ago by
Guido Hooiveld
★ 3.9k
2
votes
2
replies
1.4k
views
Correct use of arrayWeights alongside duplicateCorrelation for microarrays in Limma?
limma
duplicatecorrelation
arrayweights
8.6 years ago
willj
▴ 30
1
vote
2
replies
1.4k
views
limma normalization and arrayWeights fold change
limma
arrayweights
logfoldchange
neqc
normalization
updated 7.9 years ago by
svlachavas
▴ 830 • written 7.9 years ago by
merella.stefania
• 0
0
votes
1
reply
838
views
Illumina array weights--arrayWeights or beadCountWeights
limma
arrayweights
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
johnmcma
▴ 10
0
votes
1
reply
1.3k
views
Appropriate selection of DE list in limma before and after implementation of arrayWeights in conjuction with duplicateCorrelation functions
limma
microarray
multifactorial design
duplicatecorrelation
arrayweights
8.4 years ago
svlachavas
▴ 830
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I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…
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Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
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