Bioconductor Ashr

Showing : ashr • reset

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1.4k

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Ashr LFCShrinkage IHW DESeq2

3.1 years ago • updated 3.0 years ago Bex • 0

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1.8k

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deseq2 ashr rna-seq

4.7 years ago Alex • 0

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1.1k

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ashr DESeq2 lfcShrink svalue

3.9 years ago Enrico • 0

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1.1k

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deseq2 ashr

4.3 years ago da.de ▴ 30

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1.8k

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ashr DESeq2 apeglm

updated 3.4 years ago by Michael Love 43k • written 3.4 years ago by Guandong Shang ▴ 40

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2.5k

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ashr Deseq2 lfcThreshold

updated 3.3 years ago by Michael Love 43k • written 4.7 years ago by Iryna • 0

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973

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DESeq2 apeglm DESeq ApeGLM Ashr

updated 18 months ago by Michael Love 43k • written 18 months ago by Ndimensional ▴ 20

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791

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ashr

4.7 years ago kavator ▴ 30

8 results • Page 1 of 1

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Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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