Bioconductor Assay

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GEOquery ExpressionData assay SummarizedExperiment ExpressionAtlas

updated 9 weeks ago by pmadrigal • 0 • written 9 weeks ago by Kritikaverma2707 • 0

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ExpressionSet Assay NanoString Error Data

updated 10 months ago by James W. MacDonald 63k • written 10 months ago by junli1988 • 0

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biostatistics statistics sas git assay Job

5.1 years ago Fred Hutch (Recruiting) ▴ 40

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genomicranges assay

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by haneef.itrc • 0

4 results • Page 1 of 1

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Comment: How to update a package at Bioconductor by ma79 • 0

thanks, just informed the original maintainer to send an email.

Comment: Error: biomaRt has encountered an unexpected server error. by Mike Smith ★ 6.0k

Unfortunately, the BioMart LDS functionality have been flaky for a while now e.g. https://support.bioconductor.org/p/9143401/ , https:/…

Comment: Use with_go along with other filters in getBM function by Mike Smith ★ 6.0k

Hi @rubbit0, I'm not sure I understand what you're trying to do. Do you have a long list of Ensembl Gene IDs and you're trying to select …

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

Dear Gordon, these are my metadata. As you see some subject are missing for timepoint 1 Subject Timepoint 1 ID1 Baselin…

Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

Sure, noted.

Votes

Dispersion plot -Interpretation -DESeq2

Answer: Dispersion Estimates and MA plots

DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.

WGCNA coupled with differential expression analysis: question about baseline module detection

WGCNA with paired samples

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