Showing : assign • reset
1
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3
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1.3k
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Limma and Names Assignment
ASSIGN ASSIGN
written 12.5 years ago by ▴ 760
0
votes
1
reply
1.3k
views
Bootstrapping paired samples and tiny groups
ASSIGN ASSIGN
updated 13.6 years ago by ★ 6.0k • written 13.6 years ago by ▴ 830
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2
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1.0k
views
LIMMA: how to assign file name
limma ASSIGN limma ASSIGN
updated 5.3 years ago by 0 • written 18.9 years ago by ▴ 180
0
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1
reply
922
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Re: order in affy for R
probe affy ASSIGN probe affy ASSIGN
updated 21.9 years ago by ▴ 640 • written 21.9 years ago by ★ 2.3k
0
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1
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1.6k
views
Problems with url/download and http_proxy
Biobase annotate edd geneplotter tkWidgets ASSIGN Biobase annotate edd geneplotter
updated 21.8 years ago by ▴ 50 • written 21.8 years ago by ▴ 460
0
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0
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1.7k
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RE: [R] Problems with url/download and http_proxy
ASSIGN ASSIGN
21.8 years ago Warnes, Gregory R ▴ 460
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0
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606
views
library versions problem
ASSIGN ASSIGN
19.9 years ago Rob Dunne ▴ 230
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0
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809
views
Re: LIMMA
Normalization BRAIN ASSIGN Normalization BRAIN ASSIGN
20.8 years ago Gordon Smyth 50k
0
votes
1
reply
775
views
mean of individual rows for subsets of columns in an ExprSet
ASSIGN ASSIGN
updated 20.7 years ago by 6.7k • written 20.7 years ago by ▴ 280
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0
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591
views
Re: flags?
ASSIGN ASSIGN
20.3 years ago Gordon Smyth 50k
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votes
0
replies
729
views
error while running RMA
ASSIGN ASSIGN
20.3 years ago Jeff Lande ▴ 110
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0
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888
views
Class discovery options?
affy ASSIGN affy ASSIGN
20.1 years ago Paul Boutros ▴ 340
0
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1
reply
3.5k
views
how deal with multiplicate affy probes?
Alignment mgu74av2 probe affy ASSIGN Alignment mgu74av2 probe affy ASSIGN
updated 20.0 years ago by ★ 5.5k • written 20.0 years ago by ▴ 50
0
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3
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1.0k
views
comparing data frames
affy ASSIGN affy ASSIGN
updated 20.0 years ago by ★ 1.8k • written 20.0 years ago by ▴ 300
0
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1
reply
841
views
scatter plot
ASSIGN ASSIGN
updated 20.5 years ago by ▴ 770 • written 20.5 years ago by ▴ 20
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1
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746
views
maPrintTip confusion
GO GeneSpring ASSIGN GO GeneSpring ASSIGN
updated 19.8 years ago by ▴ 920 • written 19.9 years ago by ▴ 10
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0
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1.3k
views
color labels in hclust plot
ASSIGN ASSIGN
19.8 years ago Rudy.vanEijsden@GEN.unimaas.nl ▴ 50
0
votes
1
reply
802
views
read.marrayRaw()
marray ASSIGN marray ASSIGN
updated 19.7 years ago by ▴ 920 • written 19.7 years ago by ▴ 130
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0
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956
views
SAM: the fudge factor in Siggenes and Excel
siggenes ASSIGN siggenes ASSIGN
19.6 years ago Caimiao Wei ▴ 100
0
votes
2
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838
views
spot weight in limma
oligo ASSIGN oligo ASSIGN
19.5 years ago Ren Na ▴ 250
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2
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943
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma limmaGUI ASSIGN limma limmaGUI ASSIGN
updated 19.4 years ago by 50k • written 19.4 years ago by ▴ 50
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0
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751
views
Limma and limmaGUI with Imagene files, problems/bugs report
Normalization limma limmaGUI ASSIGN Normalization limma limmaGUI ASSIGN
19.4 years ago Breuk102 ▴ 50
0
votes
2
replies
962
views
gene classification problem
GO affy ASSIGN GO affy ASSIGN
updated 19.4 years ago by ▴ 290 • written 19.4 years ago by ▴ 890
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1
reply
629
views
Please help: AffylmGUI errors
Microarray affylmGUI ASSIGN Microarray affylmGUI ASSIGN
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 30
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0
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871
views
Please help: AffylmGUI errors (more detail)
Normalization hgu133a affylmGUI ASSIGN Normalization hgu133a affylmGUI ASSIGN
19.2 years ago Aaron Hamilton ▴ 30
0
votes
0
replies
805
views
LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
19.2 years ago Harry Hurd ▴ 60
0
votes
0
replies
833
views
LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
19.1 years ago Jain, Nitin ▴ 70
0
votes
3
replies
1.0k
views
gcrma problem
Microarray Cancer probe gcrma ASSIGN Microarray Cancer probe gcrma ASSIGN
updated 19.1 years ago by 65k • written 19.1 years ago by ▴ 120
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0
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1.1k
views
Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
19.0 years ago Diego Diez ▴ 760
0
votes
3
replies
1.1k
views
Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
updated 19.0 years ago by ▴ 760 • written 19.0 years ago by 50k
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0
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1.5k
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Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
11.5 years ago McGee, Monnie ▴ 300
0
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4
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1.1k
views
BlueFuse in limmaGUI [was LimmaGUI Error]
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
updated 18.7 years ago by ▴ 170 • written 18.7 years ago by 50k
0
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3
replies
1.4k
views
LimmaGUI Error
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
18.7 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
0
replies
841
views
Spot Quality Weights for Agilent arrays
ASSIGN ASSIGN
18.6 years ago Francesca Guana ▴ 10
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votes
0
replies
742
views
R from Perl
ASSIGN ASSIGN
18.4 years ago Duncan Temple Lang ▴ 110
0
votes
2
replies
1.5k
views
Limma: Extract genes from decideTests result
limma ASSIGN limma ASSIGN
updated 18.1 years ago by ▴ 100 • written 18.1 years ago by ▴ 360
0
votes
0
replies
704
views
vsn and microarray blank spots
Normalization vsn limma PROcess ASSIGN Normalization vsn limma PROcess ASSIGN
17.8 years ago Alessio Venier ▴ 40
0
votes
0
replies
724
views
vsn and microarray blank spots
Normalization vsn limma PROcess ASSIGN Normalization vsn limma PROcess ASSIGN
17.8 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
809
views
[R-SIG-Mac] trouble running Bioconductor
limma BUS ASSIGN limma BUS ASSIGN
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 430
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votes
0
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840
views
Top gene list
limma ASSIGN limma ASSIGN
17.6 years ago daphne mouzaki RI ▴ 80
0
votes
2
replies
953
views
Single Channel Approach for Agilent Arrays
limma ASSIGN limma ASSIGN
updated 17.6 years ago by ★ 6.0k • written 17.6 years ago by ▴ 100
0
votes
1
reply
967
views
Array normalisation with Limma: would this be reasonable?
ASSIGN ASSIGN
17.4 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
2
replies
2.0k
views
Outputting dendrogram with large numbers of genes without losing resolution
ASSIGN ASSIGN
updated 16.8 years ago by 21k • written 16.8 years ago by ▴ 40
0
votes
0
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724
views
Outputting dendrogram with large numbers of genes, without losing resolution
Cancer ASSIGN Cancer ASSIGN
16.8 years ago Aedin Culhane ▴ 510
0
votes
0
replies
1.4k
views
Help with lm and predict
ASSIGN ASSIGN
16.7 years ago Nathan Haigh ▴ 120
0
votes
1
reply
1.3k
views
simpleaffy 2.14.02, setQCEnvironment
cdf simpleaffy ASSIGN cdf simpleaffy ASSIGN
updated 16.5 years ago by ★ 1.1k • written 16.5 years ago by ▴ 50
0
votes
0
replies
821
views
automating makeContrasts call in limma
limma ASSIGN limma ASSIGN
16.5 years ago Amin Moghaddasi ▴ 130
0
votes
0
replies
1.0k
views
automating makeContrasts call in limma
limma ASSIGN limma ASSIGN
16.5 years ago Gordon Smyth 50k
0
votes
2
replies
765
views
modify CDF file for array study
cdf probe affy ASSIGN cdf probe affy ASSIGN
updated 16.5 years ago by ▴ 120 • written 16.5 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Request for the assistance to use MEDME
Microarray Normalization Organism probe limma MEDME cycle ASSIGN Microarray Normalization
updated 15.3 years ago by ▴ 30 • written 15.3 years ago by ▴ 90
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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
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Thanks Peter!
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Thank you!
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They are reorder in the decreasing order.
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Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Answer: OrgDb for maize
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