Bioconductor Atacseq

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195

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DiffBind DESeq2 ATACSeq

8 days ago • updated 5 days ago lonn • 0

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DiffBind ATACSeq

28 days ago Pierre Lindenbaum ▴ 10

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286

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DiffBind ATACSeq

3 months ago isaromero8888 • 0

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231

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DiffBind edgeR ATACSeq DESeq2

3 months ago Jawahar • 0

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244

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DiffBind ATACSeq

3 months ago inna.gur • 0

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633

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ATACseqQC ATACSeq

updated 7 weeks ago by danalvoronov ▴ 10 • written 4 months ago by jfmay • 0

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391

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dba.count DiffBind ATACSeq

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by sophie.hfliu • 0

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798

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DiffBind ATACSeq

updated 9 months ago by Malcolm Cook ★ 1.6k • written 9 months ago by Nebat • 0

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1.2k

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ATACSeq

updated 8 months ago by Noah • 0 • written 20 months ago by Taeim • 0

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1.6k

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ATACSeq regionCounts csaw

updated 4 months ago by dineika.chandrananda • 0 • written 24 months ago by zgraytho88 • 0

10 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Votes

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0