Showing : atacseqqc • reset
11
votes
21
replies
4.9k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by ▴ 20
5
votes
9
replies
3.8k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 6.9 years ago by ★ 1.3k • written 6.9 years ago by ▴ 10
2
votes
5
replies
1.5k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 5.2 years ago by ★ 4.3k • written 5.2 years ago by ▴ 20
1
vote
7
replies
1.4k
views
TSSEscore function in ATACseqQC package
ATACseqQC
2.2 years ago Liu Yu-Yu • 0
1
vote
4
replies
1.1k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 3.6 years ago by ★ 4.3k • written 3.6 years ago by ▴ 10
1
vote
1
reply
168
views
Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 5 weeks ago by 65k • written 5 weeks ago by • 0
1
vote
2
replies
1.4k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
4.7 years ago beiting ▴ 30
1
vote
11
replies
2.3k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
1
vote
4
replies
946
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
3.7 years ago Arpi Beshlikyan • 0
1
vote
2
replies
9.1k
views
Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 3.7 years ago by ★ 1.3k • written 3.7 years ago by • 0
0
votes
7
replies
1.7k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 4.8 years ago by ★ 13k • written 4.8 years ago by • 0
0
votes
1
reply
939
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
0
votes
7
replies
1.5k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 4.8 years ago by ★ 4.3k • written 4.8 years ago by • 0
0
votes
2
replies
973
views
factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 4.7 years ago by ★ 4.3k • written 4.7 years ago by • 0
0
votes
5
replies
1.4k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
0
votes
4
replies
1.9k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 3.6 years ago by ★ 1.3k • written 3.7 years ago by • 0
0
votes
2
replies
1.3k
views
*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
2.9 years ago • updated 2.8 years ago Nolan • 0
0
votes
9
replies
3.4k
views
No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
3.0 years ago • updated 2.9 years ago Xiaojie Cheng • 0
0
votes
7
replies
611
views
ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 6 weeks ago by ▴ 10 • written 4 months ago by • 0
0
votes
0
replies
473
views
NAs in TSSE for certain windows
ATACseqQC
2.6 years ago red_bricks ▴ 50
0
votes
1
reply
537
views
Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 15 months ago by ★ 1.3k • written 15 months ago by • 0
0
votes
0
replies
448
views
ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
2.6 years ago xuyao15927402897 • 0
0
votes
3
replies
1.1k
views
package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 20 months ago by ★ 5.1k • written 2.5 years ago by ▴ 30
0
votes
0
replies
558
views
[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
2.1 years ago hyjforesight • 0
0
votes
5
replies
1.6k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 4.6 years ago by 65k • written 4.6 years ago by • 0
0
votes
0
replies
104
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
6 weeks ago danalvoronov ▴ 10
0
votes
2
replies
1.0k
views
ATACseqQC needs too much memory
ATACseqQC
updated 6.4 years ago by ★ 4.3k • written 6.4 years ago by • 0
0
votes
7
replies
2.1k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 6.2 years ago by • 0 • written 6.2 years ago by ▴ 10
0
votes
1
reply
1.6k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.1 years ago by ★ 1.3k • written 6.1 years ago by • 0
0
votes
1
reply
896
views
ATACseqQC questions in R language
atacseqqc
updated 5.9 years ago by ★ 1.3k • written 5.9 years ago by • 0
0
votes
1
reply
1.0k
views
ATACseqQC: a few questions
ATACseqQC
updated 5.8 years ago by ★ 4.3k • written 5.8 years ago by • 0
0
votes
9
replies
1.5k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 5.8 years ago by ★ 4.3k • written 5.8 years ago by ▴ 10
0
votes
3
replies
1.0k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 5.7 years ago by ★ 1.3k • written 5.7 years ago by ▴ 10
0
votes
0
replies
760
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
5.1 years ago Gary ▴ 20
0
votes
6
replies
1.9k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 4.9 years ago by • 0 • written 5.0 years ago by ▴ 10
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Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…
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To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…
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We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.
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Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…
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C: Add new columns to DESeqResults from text file by matching rownames.
Answer: geneList error in clusterprofiler
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