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autoplot
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2
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3
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2.2k
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No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 8.2 years ago by
aaron
▴ 10 • written 8.2 years ago by
timothypyork
• 0
1
vote
4
replies
2.4k
views
Cannot get ggbio autoplot to run successfully on R 3.2 (3.2.2 or 3.2.3)
ggbio
ggplot2
autoplot
bioconductor
gene models
updated 8.2 years ago by
snf
▴ 10 • written 8.3 years ago by
danhovelson
▴ 10
0
votes
0
replies
853
views
Function to specify axis limits according to data range for node or parent node
ggcyto
autoplot
axis
6.2 years ago
anders.tondell
▴ 30
0
votes
0
replies
852
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio
ideogram
autoplot
5.3 years ago
gpwhiz
▴ 10
0
votes
4
replies
934
views
How to use ggcyto_arrange to plotframes in a frameset in a new order
ggcyto
ggcyto_arrange
autoplot
updated 3.9 years ago by
Jake Wagner
▴ 310 • written 3.9 years ago by
alavy
▴ 30
0
votes
1
reply
1.3k
views
ggbio OrganismDb autoplot - reduce vs identity
ggbio
autoplot
updated 7.9 years ago by
James W. MacDonald
65k • written 7.9 years ago by
Lescai, Francesco
▴ 380
0
votes
2
replies
1.6k
views
x-axis ticks are misaligned in ggbio tracks
ggbio
bugs
tracks
autoplot
9.2 years ago
cooketho
• 0
7 results • Page
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Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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