Bioconductor Bam file

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bioconductor shortread bam file nucler

updated 6.9 years ago by Dario Strbenac ★ 1.5k • written 6.9 years ago by jfgout ▴ 10

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1.5k

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csaw up regions bam file gain and loss of enrichment

updated 8.8 years ago by Aaron Lun ★ 28k • written 8.8 years ago by JoannaF ▴ 10

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5.7k

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bam file HIV cytosine

7.3 years ago achaillon • 0

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28k

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R rnaseq bam file

updated 6.7 years ago by Gordon Smyth 52k • written 6.7 years ago by Merlin ▴ 10

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4.3k

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rsamtools bam file

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by seungjoon.kim • 0

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1.7k

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paired-end reads bam file

7.2 years ago ioannis.vardaxis ▴ 30

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1.3k

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bam file STAR Illumina

updated 6.7 years ago by ta_awwad ▴ 10 • written 6.7 years ago by soheilazareie • 0

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1.4k

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medips bam file

8.6 years ago fkuo ▴ 10

8 results • Page 1 of 1

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Comment: Differential variability modelling with vst() expression by convincing.shark.jqvy • 0

Your approach to differential variability modeling using vst() looks promising! It mirrors the challenge of mastering levels in [Geometry D…

Answer: DESeq2 Heatmap by James W. MacDonald 67k

Two things. First, `scale` is already vectorized, so you don't have to use `apply`. You can instead just do `t(scale(t(mat)))` . Second, th…

Answer: Improve performance of qusage aggregateGeneSet by James W. MacDonald 67k

This support site is meant mostly to help people with questions about using Bioconductor packages rather than posting code improvements. I …

Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Votes

Comment: DESeq2 for single cell pseudobulk processing

C: Limma: how to get same output as topTable but for all the genes ?

A: Processing agilent data by limma

A: Linear regression in DESeq2

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

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