Showing : batch effects • reset
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full confounding between batch and treatment effects
batch effects limma batch-correction RNAseq RUVseq
updated 13 months ago by 57k • written 13 months ago by • 0
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3
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127
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Problem with including batch effects in linear model in LIMMA- samples are removed
limma batch effects linear model
updated 16 months ago by 57k • written 16 months ago by ▴ 20
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407
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adjusting for batch using ComBat (sva) - singularity error
microarray combat sva batch effects
17 months ago anne.bozack • 0
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227
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DEG among experimental and control group in MAST
MAST DEG batch effects
21 months ago chendianyu • 0
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177
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adding batch effects as a covariate in additive model in edgeR
edger batch effects
updated 23 months ago by 57k • written 23 months ago by • 0
1
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8
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556
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Code to address batch effect in total number of reads/ sample for DEG using Ballgown
differential expression analysis ballgown r batch effects total number of reads
updated 2.7 years ago by 57k • written 2.7 years ago by • 0
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Batch correction with uncertain biological variables
sva svaseq batch effect batch effects batch effect correction
3.9 years ago vedran.franke • 0
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Adjusting batch effects in microarray expression data using empirical Bayes methods
ComBat microarray batch effects
updated 3.9 years ago by 57k • written 3.9 years ago by • 0
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Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
deseq2 random effects batch effects RNA-seq rna-seq
updated 3.9 years ago by 33k • written 3.9 years ago by • 0
9 results • Page 1 of 1
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Comment: pathview: unable to use option "out.suffix" by 文祥 • 0
Hi I made a mistake. That was a typo! No space was needed after the "out.suffix". ``` pathview(gene.data = sample.fc, pathway.id = keggi…
Comment: pathview: unable to use option "out.suffix" by 文祥 • 0
Add coment about sessionInfo R version 4.1.0 (2021-05-18) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Big Sur 10.16 …
Comment: To retrieve the transcript from gff file with the longest isoform by Aneesha • 0
Okay, Thank You
Comment: how to plot multiple RLEs on same plot? by xiaofeiwang18266 ▴ 20
Thanks a lot!
Answer: Data input for aracne2regulon function in viper package by reef103 • 0
Hi @luna_p , I'm sorry I didn;t see this before. The error might be due to a lack of match between the genes in the network (regulators and…
Votes
Answer: Difference in mixed test for fry vs mroast
A: DESeq2 variance transformation error and plot dispersion Estimate
Error in DESeqDataSet : some values in assay are not integers
A: Error in DESeqDataSet : some values in assay are not integers
A: Error in DESeqDataSet : some values in assay are not integers
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