Showing : batch effects • reset
2
votes
4
replies
235
views
full confounding between batch and treatment effects
batch effects limma batch-correction RNAseq RUVseq
updated 16 months ago by 58k • written 16 months ago by • 0
0
votes
3
replies
164
views
Problem with including batch effects in linear model in LIMMA- samples are removed
limma batch effects linear model
updated 19 months ago by 58k • written 19 months ago by ▴ 20
0
votes
0
replies
503
views
adjusting for batch using ComBat (sva) - singularity error
microarray combat sva batch effects
20 months ago anne.bozack • 0
0
votes
0
replies
276
views
DEG among experimental and control group in MAST
MAST DEG batch effects
24 months ago chendianyu • 0
0
votes
0
replies
202
views
adding batch effects as a covariate in additive model in edgeR
edger batch effects
updated 2.2 years ago by 58k • written 2.2 years ago by • 0
1
vote
8
replies
618
views
Code to address batch effect in total number of reads/ sample for DEG using Ballgown
differential expression analysis ballgown r batch effects total number of reads
updated 3.0 years ago by 58k • written 3.0 years ago by • 0
0
votes
0
replies
744
views
Batch correction with uncertain biological variables
sva svaseq batch effect batch effects batch effect correction
4.1 years ago vedran.franke • 0
1
vote
1
reply
1.2k
views
Adjusting batch effects in microarray expression data using empirical Bayes methods
ComBat microarray batch effects
updated 4.1 years ago by 58k • written 4.1 years ago by • 0
0
votes
2
replies
684
views
Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
deseq2 random effects batch effects RNA-seq rna-seq
updated 4.2 years ago by 34k • written 4.2 years ago by • 0
9 results • Page 1 of 1
Recent ...
Replies
Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Comment: Issue::DesignPrimers DECIPHER by slwmartin • 0
Hey, I'm having this issue too. I've tried reinstalling using Conda a few times without luck. Did you reinstall with Conda or from the tar …
Comment: Log fold change interpretation of time series with Wald test by jd348 • 0
So would you recommend still using Log2fold change as a measurement for effect size?
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Awards • All
Teacher to Vincent J. Carey, Jr. 6.5k
Scholar to Rory Stark ★ 4.1k
Scholar to jbnrodriguez • 0
Scholar to Yang Liao ▴ 260
Scholar to James W. MacDonald 58k
Locations • All
China, 30 minutes ago
EMBL Heidelberg / de.NBI, 1 hour ago
Thailand, 2 hours ago
WEHI, Melbourne, Australia, 2 hours ago
Canada, 2 hours ago
Traffic: 213 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6