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batch-effect
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742
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Export Results from BatchQC Shiny App
BatchQC
RNA-seq
R
Shiny
batch-effect
4.0 years ago
manninm
• 0
4
votes
4
replies
2.3k
views
Average read counts and batch-effect correction in edgeR
edgeR
batch-effect
RNA-seq
read counts
ngs
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
Roman
▴ 20
3
votes
7
replies
2.0k
views
Batch effects between controls
batch-effect
ruvseq
updated 6.5 years ago by
James W. MacDonald
65k • written 6.5 years ago by
llo
▴ 10
2
votes
5
replies
5.8k
views
RNA-Seq Batch correction negative values
rna-seq
batch-effect
combat
scran
sva
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
rmf
▴ 20
4 results • Page
1 of 1
Recent ...
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Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up question. Following up in In your [1-2-3 article][1], you say that > "... the …
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Comment: Error retrieving ensembl gene id using biomaRt...
by
James W. MacDonald
65k
Or that. ;-D
Answer: Error retrieving ensembl gene id using biomaRt...
by
Mike Smith
★ 6.5k
I think you have the assignment operator (`<-`) the wrong way round. It should be `df_biomrt_tmp <- getBM(...`
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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