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637

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batch limma

updated 7 months ago by ATpoint ★ 3.4k • written 7 months ago by luca.s ▴ 50

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617

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BatchEffect batch RNASeqR formula DESeq2

updated 13 months ago by Michael Love 40k • written 13 months ago by estafana.t98 • 0

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889

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Batch BatchEffect DESeq2

updated 19 months ago by James W. MacDonald 63k • written 19 months ago by dequattro.concetta ▴ 10

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803

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batch RNASeq BatchEffect DESeq2

updated 20 months ago by Steve Lianoglou 13k • written 21 months ago by Jonas • 0

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2.9k

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deseq2 comparison batch

updated 2.8 years ago by Joana.silvestre • 0 • written 4.1 years ago by amin.ghareyazi • 0

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726

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limma BatchEffect duplicatecorrelation block batch

updated 2.8 years ago by Kevin Blighe 3.8k • written 2.8 years ago by Katherine • 0

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1.3k

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deseq2 batch removebatch effect

updated 2.9 years ago by Michael Love 40k • written 2.9 years ago by Bine ▴ 20

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1.4k

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scRNA zinbwave batch IntegratedData

updated 3.0 years ago by davide risso ▴ 920 • written 3.0 years ago by Assa Yeroslaviz ★ 1.5k

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3.3k

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limma deseq2 batch design batch effect

3.1 years ago Pietro ▴ 40

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496

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deseq2 miRNASeq designmatrix Batch

updated 3.5 years ago by Michael Love 40k • written 3.5 years ago by anshulmbi • 0

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721

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deseq2 RUV batch highly variable genes

updated 3.6 years ago by tmms • 0 • written 3.6 years ago by f_pardow • 0

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971

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deseq2 ruv batch

updated 4.0 years ago by Michael Love 40k • written 4.0 years ago by r.tom • 0

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806

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deseq2 batch

updated 4.0 years ago by Michael Love 40k • written 4.0 years ago by Solarion • 0

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1.3k

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limma paired batch

updated 4.0 years ago by Gordon Smyth 48k • written 4.0 years ago by english.server ▴ 20

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13k

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deseq2 batch effect batch

4.3 years ago Mozart ▴ 20

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641

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deseq2 batch sva t-test design matrix

updated 4.4 years ago by Michael Love 40k • written 4.4 years ago by Mozart ▴ 20

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1.1k

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edger limma design contrasts batch

updated 4.5 years ago by Aaron Lun ★ 28k • written 4.5 years ago by Pietro ▴ 40

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786

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deseq2 batch

updated 4.5 years ago by Michael Love 40k • written 4.5 years ago by sherajilir • 0

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780

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DESeq2 Edgeseq batch

updated 4.7 years ago by Michael Love 40k • written 4.7 years ago by AZ ▴ 30

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2.3k

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deseq2 ruvseq cookscutoff covariates batch

6.9 years ago j.viana • 0

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947

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rna-seq edgeR limma removebatcheffect() batch

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by Ekarl2 ▴ 80

21 results • Page 1 of 1

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Comment: DMRcate design by James W. MacDonald 63k

That's what identical context means.

Comment: DMRcate design by Jitendra ▴ 10

Thanks James, but I did not understand it clearly. Could I used same Limma design matrix for DMRcate?

Comment: Steps needed to change design (relevel factors) in DESeq2 by jd774 • 0

Thanks for the example code, would the `"condition_1_vs_2"` and `"condition_2_vs_1"` giving same or different results on DEGs and normalize…

Answer: heatmap.2 - change column & row locations; angle / rotate by nehagoyal6397 • 0

Window 10 are comes with the new updates [how to fix connections to wireless displays in windows 10](http://fixwindows10connections.com) ju…

Comment: filtering out lowly expressed genes by groups by James W. MacDonald 63k

You might want to filter first though. ``` fun <- function(deseqobj, contvec, cutoff) { lildds <- dds[rowMeans(assays(deseqobj…