Showing : bayesian • reset
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
18.2 years ago McGee, Monnie ▴ 300
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4
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How to get started with bioconductor ?
Bayesian limma Bayesian limma
updated 20.6 years ago by 50k • written 20.6 years ago by ▴ 20
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Nonorthogonal multiple comparisons in Limma/ Books on Bayesian Statistics
Bayesian Classification limma bridge Bayesian Classification limma bridge
19.7 years ago Gordon Smyth 50k
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Differential expressiong with two groups in BASiCS
BASiCS single-cell bayesian differential expression
updated 6.2 years ago by ▴ 10 • written 6.2 years ago by ▴ 10
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3
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Timeseries loop design analysis using Limma or Maanova?
Bayesian Clustering TimeCourse timecourse oligo Bayesian Clustering TimeCourse timecourse
18.2 years ago Pete ▴ 70
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6
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6.9k
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DeSeq vs current version of Cuffdiff
Sequencing Bayesian Cancer DESeq Sequencing Bayesian Cancer DESeq
updated 12.2 years ago by ▴ 290 • written 12.2 years ago by ★ 2.0k
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Bayesian networks in BioC
Bayesian Bayesian
updated 17.9 years ago by ★ 2.4k • written 17.9 years ago by ▴ 320
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10
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1.6k
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objective criterion for identification of outlying arrays by pca
Bayesian Cancer Bayesian Cancer
updated 12.5 years ago by 6.7k • written 12.5 years ago by ★ 2.0k
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Practical utilization of SQN in ST1.0 Gene normalization.
Bayesian Cancer oligo Bayesian Cancer oligo
updated 12.5 years ago by ★ 4.2k • written 12.5 years ago by ★ 2.0k
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Rgraphviz produces segmentation fault when attempting to plot Bayesian Belief Networks
Bayesian graph Bayesian graph
updated 12.4 years ago by 21k • written 12.4 years ago by ▴ 20
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TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Normalization Bayesian edgeR baySeq DESeq Normalization Bayesian edgeR baySeq DESeq
updated 12.4 years ago by ▴ 40 • written 12.4 years ago by 50k
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
7
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1
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How does limma t-test work?
Bayesian limma Bayesian limma
updated 11.6 years ago by 65k • written 11.6 years ago by ▴ 160
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BASiCS spike info for single cell RNA sequences or Bayesian statistics help
BASiCS bayesian single cell scrnaseq
updated 6.2 years ago by ▴ 10 • written 6.2 years ago by ▴ 10
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1
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1.1k
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Fwd: Presentation 19th June
Bayesian convert Bayesian convert
14.9 years ago Mark Robinson ★ 1.1k
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995
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RELATED TO CLUSTERING
Bayesian Bayesian
updated 12.8 years ago by 21k • written 12.8 years ago by ▴ 50
3
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1.4k
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Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma ebayes bayesian ls
updated 5.5 years ago by 50k • written 5.5 years ago by ▴ 10
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1.0k
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Removing genes from linear model fit advice sought
Microarray Bayesian Microarray Bayesian
updated 14.2 years ago by ▴ 190 • written 14.2 years ago by ▴ 10
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reply
980
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blue fuse output and limma
Bayesian Bayesian
updated 19.7 years ago by 50k • written 19.7 years ago by ▴ 150
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analysis with no replication
Bayesian limma Bayesian limma
updated 16.9 years ago by ▴ 390 • written 16.9 years ago by ▴ 450
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1
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1.0k
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
13.6 years ago Gordon Smyth 50k
0
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1
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1.3k
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Job Posting in Biostatistics/Statistics
Bayesian Survival Cancer PROcess ASSET Bayesian Survival Cancer PROcess ASSET
updated 21.4 years ago by ▴ 80 • written 21.4 years ago by ▴ 10
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1.3k
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.5 years ago Hervé Pagès 16k
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1.3k
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BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 16.0 years ago by ★ 1.6k • written 16.0 years ago by 25k
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
20.2 years ago Wolfgang Huber ★ 13k
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1.2k
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Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
14.5 years ago Patrick Aboyoun ★ 1.6k
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1.1k
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Bioconductor Digest, Vol 83, Issue 23
Bayesian ROC graph limma Bayesian ROC graph limma
14.2 years ago M. Carmen Ruiz de Villa ▴ 10
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1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
13.9 years ago David Lyon ▴ 340
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967
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
13.7 years ago Orfe, Lisa ▴ 20
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
13.5 years ago Martin Morgan 25k
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Bayesian additive regression trees (BART) for classification analysis of gene expression data
Bayesian Regression Bayesian Regression
13.2 years ago Santosh Patnaik ▴ 30
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Rgraphviz plot of bnlearn object with text too big
Network Bayesian Rgraphviz Network Bayesian Rgraphviz
12.8 years ago João Daniel Nunes Duarte ▴ 30
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Pathway specific gene lists in SPIA
Bayesian Cancer Bayesian Cancer
12.8 years ago Richard Friedman ★ 2.0k
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objective criterion for identification of outlying arrays by pca
Network Bayesian Cancer Network Bayesian Cancer
12.5 years ago shirley zhang ★ 1.0k
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nem package, nem.BN learning with 'continuous_Baysian' not possible
Network Bayesian nem Network Bayesian nem
11.8 years ago Siebourg Juliane ▴ 10
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Post Doctoral Openings at University of Pittsburgh
Bayesian HIV Bayesian HIV
11.5 years ago Porterfield, Toni ▴ 10
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
6.0 years ago floriandeckert ▴ 30
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Help baySeq
Bayesian edgeR Bayesian edgeR
12.2 years ago Tina Asante Boahene ▴ 100
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BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
17.0 years ago Seth Falcon ★ 7.4k
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Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
16.3 years ago Jean Yee Hwa Yang ▴ 130
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Limma script - Opinions requested
Annotation Bayesian limma PROcess Annotation Bayesian limma PROcess
13.6 years ago Orfe, Lisa ▴ 20
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Filtering out tags with low counts in DESeq and EgdeR?
Bayesian limma edgeR DESeq Bayesian limma edgeR DESeq
12.9 years ago Xiaohui Wu ▴ 280
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NUSE and RLE PLOTS for ST1.0 Gene chips with oligo w/o 1st quantile line
Bayesian Cancer oligo Bayesian Cancer oligo
12.5 years ago Richard Friedman ★ 2.0k
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Bioconductor 2.10 is released
Transcription Sequencing Microarray Annotation Normalization Visualization Network Bayesian
12.1 years ago Dan Tenenbaum ★ 8.2k
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1.0k
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normalization and clustering etc...
Bayesian Clustering Leukemia affy PROcess DOSE Bayesian Clustering Leukemia affy PROcess
21.1 years ago Phguardiol@aol.com ▴ 720
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0
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1000
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
20.5 years ago Wolfgang Huber ★ 13k
0
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0
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839
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Question about Microarray before/after treatment, Paired Analysis
Microarray Bayesian Microarray Bayesian
20.0 years ago Haiyan Wu ▴ 10
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831
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Replicates within array
Microarray Normalization Bayesian Microarray Normalization Bayesian
19.8 years ago Hua Weng ▴ 60
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892
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Nonorthogonal multiple comparisons in Limma/ Books on Bayesian Statistics
Bayesian Cancer limma bridge Bayesian Cancer limma bridge
19.7 years ago Richard Friedman ★ 2.0k
0
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0
replies
666
views
which library - identify gene expression markers using Bayesian
Bayesian Bayesian
19.6 years ago Liu, Xin ▴ 130
50 results • Page 1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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Scholar to Robert Castelo ★ 3.2k
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