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bayespeak
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak
bug
7.6 years ago
balwierz
▴ 40
1
vote
3
replies
1.1k
views
Error in bayespeak function importing data
bayespeak
8.6 years ago
Reed
▴ 10
8
votes
9
replies
6.0k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq
DNAseq
ATAC
bayespeak
narrowpeaks
updated 8.8 years ago by
Gordon Smyth
50k • written 8.9 years ago by
samuel collombet
▴ 140
0
votes
8
replies
1.9k
views
chip-seq data
ChIPSeq
chipseq
BayesPeak
ChIPSeq
chipseq
BayesPeak
11.5 years ago
John linux-user
▴ 210
0
votes
1
reply
1.0k
views
Question about ChIPpeakAnno R package
AnnotationData
annotate
ChIPpeakAnno
BayesPeak
AnnotationData
annotate
ChIPpeakAnno
11.6 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
913
views
Upgrade bioconductor to version 2.6
BayesPeak
BayesPeak
12.6 years ago
Mary Ellen Fitzpatrick
▴ 20
0
votes
7
replies
1.8k
views
error in bayespeak function
ChIPSeq
GO
BSgenome
BSgenome
chipseq
BayesPeak
ChIPSeq
GO
BSgenome
BSgenome
chipseq
updated 12.7 years ago by
Jonathan Cairns
▴ 130 • written 12.7 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
990
views
BayesPeak and RangedData obj output
BayesPeak
BayesPeak
updated 13.4 years ago by
Jonathan Cairns
▴ 130 • written 13.4 years ago by
Binbin Liu
▴ 30
0
votes
4
replies
1.6k
views
BayesPeak segfault woes
BayesPeak
BayesPeak
updated 13.8 years ago by
Jonathan Cairns
▴ 130 • written 13.8 years ago by
Tim Rayner
▴ 270
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
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This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
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65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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