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bayespeak
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak
bug
7.6 years ago
balwierz
▴ 40
1
vote
3
replies
1.1k
views
Error in bayespeak function importing data
bayespeak
8.6 years ago
Reed
▴ 10
8
votes
9
replies
6.0k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq
DNAseq
ATAC
bayespeak
narrowpeaks
updated 8.8 years ago by
Gordon Smyth
50k • written 8.9 years ago by
samuel collombet
▴ 140
0
votes
8
replies
1.9k
views
chip-seq data
ChIPSeq
chipseq
BayesPeak
ChIPSeq
chipseq
BayesPeak
11.5 years ago
John linux-user
▴ 210
0
votes
1
reply
1.0k
views
Question about ChIPpeakAnno R package
AnnotationData
annotate
ChIPpeakAnno
BayesPeak
AnnotationData
annotate
ChIPpeakAnno
11.6 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
915
views
Upgrade bioconductor to version 2.6
BayesPeak
BayesPeak
12.6 years ago
Mary Ellen Fitzpatrick
▴ 20
0
votes
7
replies
1.8k
views
error in bayespeak function
ChIPSeq
GO
BSgenome
BSgenome
chipseq
BayesPeak
ChIPSeq
GO
BSgenome
BSgenome
chipseq
updated 12.7 years ago by
Jonathan Cairns
▴ 130 • written 12.7 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
991
views
BayesPeak and RangedData obj output
BayesPeak
BayesPeak
updated 13.4 years ago by
Jonathan Cairns
▴ 130 • written 13.4 years ago by
Binbin Liu
▴ 30
0
votes
4
replies
1.6k
views
BayesPeak segfault woes
BayesPeak
BayesPeak
updated 13.8 years ago by
Jonathan Cairns
▴ 130 • written 13.8 years ago by
Tim Rayner
▴ 270
9 results • Page
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Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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