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bayseq
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0
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476
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Help with baySeq paired data analysis - error running 'getLikelihoods'
baySeq
23 months ago
sharvari gujja
▴ 40
0
votes
1
reply
2.4k
views
PCA analysis with 2 biological replicates
bayseq
PCA
5.0 years ago
bsad
• 0
2
votes
2
replies
1.1k
views
Setting up Experiment Design in baySeq
bayseq
updated 7.5 years ago by
Thomas J Hardcastle
▴ 180 • written 7.5 years ago by
adityabandla
▴ 10
0
votes
5
replies
1.4k
views
baySeq pairedData error
bayseq
updated 7.9 years ago by
Thomas J Hardcastle
▴ 180 • written 7.9 years ago by
amab424
• 0
0
votes
0
replies
1.3k
views
baySeq missing data
bayseq
missing data
8.9 years ago
k.w.lau
• 0
1
vote
5
replies
2.9k
views
baySeq issues and questions
bayseq
metagenomics
9.4 years ago • updated 9.2 years ago
lordbleys
• 0
1
vote
2
replies
1.1k
views
more complicated hypotheses than differential expression (with baySeq or a similar package)
bayseq
hypotheses
updated 9.4 years ago by
Gordon Smyth
50k • written 9.4 years ago by
Will Landau
• 0
0
votes
1
reply
1.6k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 10.0 years ago by
Koji Kadota
▴ 10 • written 10.0 years ago by
Gordon Smyth
50k
0
votes
1
reply
1.7k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 10.0 years ago by
Jianqiang SUN
▴ 10 • written 10.0 years ago by
Pankaj Agarwal
▴ 100
0
votes
2
replies
1.5k
views
Fwd: Paired Data Analysis in baySeq package
baySeq
baySeq
updated 10.1 years ago by
zhao shilin
▴ 60 • written 10.1 years ago by
Thomas J Hardcastle
▴ 180
0
votes
0
replies
1.0k
views
Paired Data Analysis in baySeq package
baySeq
baySeq
10.1 years ago
zhao shilin
▴ 60
0
votes
1
reply
1.1k
views
bayseq pair data
baySeq
baySeq
updated 10.5 years ago by
Thomas J Hardcastle
▴ 180 • written 10.5 years ago by
Guest User
★ 13k
0
votes
2
replies
2.8k
views
multi-mapped reads: Cufflinks + baySeq? edgeR?
GO
baySeq
GO
baySeq
11.1 years ago
Guest User
★ 13k
0
votes
2
replies
1.2k
views
weired bayseq results
baySeq
baySeq
11.4 years ago
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
813
views
Bioconductor Digest, Vol 116, Issue 8
baySeq
baySeq
11.5 years ago
Thomas J Hardcastle
▴ 180
0
votes
0
replies
832
views
baySeq and samplesize factor
baySeq
baySeq
11.5 years ago
Fatemehsadat Seyednasrollah
▴ 260
0
votes
1
reply
4.1k
views
RNA-seq analysis and two-way ANOVAs
edgeR
baySeq
DEGseq
DESeq
DEXSeq
edgeR
baySeq
DEGseq
DESeq
DEXSeq
updated 11.6 years ago by
Gordon Smyth
50k • written 11.6 years ago by
Elena Sorokin
▴ 150
0
votes
3
replies
1.1k
views
Help with plot comparison
baySeq
DEGseq
baySeq
DEGseq
12.1 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.1k
views
DEGseq help
baySeq
DEGseq
baySeq
DEGseq
12.1 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.1k
views
FDR (False Discovery Rate)
baySeq
DEGseq
baySeq
DEGseq
12.1 years ago
Tina Asante Boahene
▴ 100
0
votes
2
replies
1.2k
views
Help With RNA-seq
Annotation
Normalization
Kidney
edgeR
baySeq
Annotation
Normalization
Kidney
edgeR
baySeq
12.2 years ago
Valerie Obenchain
★ 6.8k
0
votes
3
replies
1.3k
views
Help With RNA-seq
Normalization
edgeR
baySeq
Normalization
edgeR
baySeq
updated 12.2 years ago by
Valerie Obenchain
★ 6.8k • written 12.2 years ago by
Tina Asante Boahene
▴ 100
0
votes
1
reply
2.2k
views
TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Normalization
Bayesian
edgeR
baySeq
DESeq
Normalization
Bayesian
edgeR
baySeq
DESeq
updated 12.4 years ago by
Smith, Hilary A
▴ 40 • written 12.4 years ago by
Gordon Smyth
50k
0
votes
0
replies
1.1k
views
TMM and calcNormFactors: Normalization in baySeq to match, edgeR and DESeq (Smith, Hilary A)
Normalization
edgeR
baySeq
DESeq
Normalization
edgeR
baySeq
DESeq
12.4 years ago
Thomas J Hardcastle
▴ 180
0
votes
0
replies
2.2k
views
bayseq and edgeR for multi groups comparisons
edgeR
baySeq
edgeR
baySeq
12.4 years ago
Gordon Smyth
50k
0
votes
0
replies
1.3k
views
baySeq issues
edgeR
baySeq
edgeR
baySeq
12.7 years ago
Iain Gallagher
▴ 930
0
votes
0
replies
1.1k
views
RNA-Seq with multiple factors [was Informations about DESeq package]
RNASeq
edgeR
baySeq
DESeq
RNASeq
edgeR
baySeq
DESeq
12.9 years ago
Gordon Smyth
50k
0
votes
2
replies
1.0k
views
Bayseq vignette is missing
baySeq
baySeq
updated 13.8 years ago by
Chao-Jen Wong
▴ 580 • written 13.8 years ago by
Naomi Altman
★ 6.0k
28 results • Page
1 of 1
Recent ...
Replies
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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