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new window cairo bundle Re: [Rd] R/Sweave/cairo/freetype bug fix.
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10.9 years ago
Hin-Tak Leung
▴ 30
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Agilent Arrays
affy
oligo
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affy
oligo
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18.8 years ago
Naomi Altman
★ 6.0k
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differences or 1-channel (was Re: Agilent Arrays)
Normalization
GO
probe
affy
affydata
vsn
limma
marray
BEAT
Normalization
GO
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affy
18.8 years ago
Naomi Altman
★ 6.0k
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2
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1.3k
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Bioconductor Digest, Vol 28, Issue 23
Normalization
probe
affy
affydata
limma
marray
BEAT
Normalization
probe
affy
affydata
updated 18.8 years ago by
Wolfgang Huber
★ 13k • written 18.8 years ago by
Gordon Smyth
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Affymetrix Software Development Conference Early Registration rat es - final days
SNP
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Network
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SNP
GO
Network
BEAT
21.0 years ago
DevNet
▴ 20
5 results • Page
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
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fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
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A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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