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new window cairo bundle Re: [Rd] R/Sweave/cairo/freetype bug fix.
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10.9 years ago
Hin-Tak Leung
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Agilent Arrays
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Naomi Altman
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differences or 1-channel (was Re: Agilent Arrays)
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18.8 years ago
Naomi Altman
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Bioconductor Digest, Vol 28, Issue 23
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updated 18.8 years ago by
Wolfgang Huber
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Gordon Smyth
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Affymetrix Software Development Conference Early Registration rat es - final days
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21.0 years ago
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Comment: FilterByExpr low counts with small sample size
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Gordon Smyth
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As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
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Gordon Smyth
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In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
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Gordon Smyth
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I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
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Chris
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Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
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wichaidi
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Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
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Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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