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Comment: p value is 0, padj is 0
by
Michael Love
43k
```
> set.seed(1); t.test(rnorm(200,rep(c(0,80),each=100)) ~ rep(0:1,each=100))$p.value
[1] 0
```
Answer: Cannot install GO.db and org.Hs.eg.db
by
James W. MacDonald
67k
You might try tracing the namespace loading.
```
Sys.setenv("_R_TRACE_LOADNAMESPACE_"="2")
install("org.Hs.eg.db")
```
And see if th…
Answer: p value is 0, padj is 0
by
James W. MacDonald
67k
It is quite possible for a very small p-value to remain very small after multiplicity adjustment. I don't know the cutoff for `DESeq2` to r…
Answer: Help using rtracklayer for gene ID extraction
by
James W. MacDonald
67k
You don't need `rtracklayer` for this (not directly anyway), but instead you need `txdbmaker` which you can use to make a `TxDb` object tha…
Answer: Feature Counts - potential bug with outfile.jcounts
by
Wei Shi
★
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We will further develop the junction quantification module to support the use of user-provided annotation data for annotating detected junc…
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