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Showing :
bedtools
•
reset
5
votes
9
replies
9.0k
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subsetByOverlaps : comparing GRANGES and keeping all the information in the METACOLUMNS
granges
bedtools
intersect
updated 5.7 years ago by
lee.s
▴ 70 • written 5.7 years ago by
Bogdan
▴ 670
2
votes
3
replies
2.3k
views
Counting reads in fixed width peaks with DiffBind::dba.count without re-centering?
diffbind
chipseq
counts
peaks
bedtools
updated 3.0 years ago by
Rory Stark
★ 5.1k • written 6.0 years ago by
Ni-Ar
▴ 10
0
votes
0
replies
972
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
6.3 years ago
linuxborg2
• 0
1
vote
1
reply
1.5k
views
Filtering a BED file according to genomic annotation
bed files
bedtools
filtering
chipseq
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
rbronste
▴ 60
0
votes
4
replies
1.3k
views
Error: HelloRanges eval
HelloRanges
bedtools
6.9 years ago
bioinf
▴ 10
2
votes
7
replies
2.0k
views
Minimum overlap for summarizeOverlaps() to call hit
summarizeoverlaps
bedtools
8.1 years ago
tmartinez
• 0
6 results • Page
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Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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