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bedtools
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5
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subsetByOverlaps : comparing GRANGES and keeping all the information in the METACOLUMNS
granges
bedtools
intersect
updated 5.6 years ago by
lee.s
▴ 70 • written 5.6 years ago by
Bogdan
▴ 670
2
votes
7
replies
2.0k
views
Minimum overlap for summarizeOverlaps() to call hit
summarizeoverlaps
bedtools
8.1 years ago
tmartinez
• 0
2
votes
3
replies
2.3k
views
Counting reads in fixed width peaks with DiffBind::dba.count without re-centering?
diffbind
chipseq
counts
peaks
bedtools
updated 2.9 years ago by
Rory Stark
★ 5.1k • written 5.9 years ago by
Ni-Ar
▴ 10
1
vote
1
reply
1.5k
views
Filtering a BED file according to genomic annotation
bed files
bedtools
filtering
chipseq
updated 6.2 years ago by
Aaron Lun
★ 28k • written 6.2 years ago by
rbronste
▴ 60
0
votes
4
replies
1.3k
views
Error: HelloRanges eval
HelloRanges
bedtools
6.8 years ago
bioinf
▴ 10
0
votes
0
replies
958
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
6.2 years ago
linuxborg2
• 0
6 results • Page
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Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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