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bgx
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943
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missing probes from illuminaHumanv3ProbeID.db
Annotation
Cancer
bgx
Annotation
Cancer
bgx
15.8 years ago
Lynn Amon
▴ 280
0
votes
1
reply
1.1k
views
readBGX - sigma2.1 error
bgx
BGmix
bgx
BGmix
14.8 years ago
Lucas Santana dos Santos
▴ 60
0
votes
0
replies
775
views
bgx on data without replication
Microarray
affy
bgx
Microarray
affy
bgx
13.8 years ago
Ernest Turro
▴ 30
0
votes
4
replies
1.7k
views
gc-rma and vsn normalization for rat microarray data
Microarray
Annotation
Normalization
vsn
bgx
puma
Microarray
Annotation
Normalization
vsn
updated 13.8 years ago by
Benilton Carvalho
★ 4.3k • written 13.8 years ago by
Rainer Tischler
▴ 60
0
votes
6
replies
1.4k
views
Important: Help with eBayes in AgiMicrRna and on how to find differentially expressed genes
bgx
AgiMicroRna
bgx
AgiMicroRna
updated 12.2 years ago by
Lucas Santana dos Santos
▴ 60 • written 12.1 years ago by
Karthik K N
▴ 200
0
votes
1
reply
2.6k
views
Normalization of Illumina Array with separate bgx-file
Annotation
limma
beadarray
bgx
Annotation
limma
beadarray
bgx
updated 10.1 years ago by
Gordon Smyth
50k • written 10.1 years ago by
Stefanie Busch
▴ 10
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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