Showing : bhc • reset
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Error on FindOptimalBinning function
bhc error
4.1 years ago pavel.granalacant • 0
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648
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what is the role of 'itemLabels' in 'bhc' function
bhc
4.7 years ago sk.rhyeu • 0
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3
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1.6k
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BHC crashes on a 100 samples and 4 variables
software error bhc
updated 8.8 years ago by ▴ 60 • written 8.8 years ago by • 0
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2
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1.4k
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BHC breaks on simple dataset
bhc
updated 9.0 years ago by ▴ 60 • written 9.1 years ago by • 0
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1
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1.2k
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Heatmaps in BHC package
bhc
updated 9.0 years ago by ▴ 60 • written 9.3 years ago by • 0
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4
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1.1k
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BHC appears to be broken
BHC BHC
11.0 years ago Joseph Viviano ▴ 20
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Error when trying to build a package that needs to import GO.db, GOstats, ath1121501.db packages
Annotation GO ath1121501 BHC Annotation GO ath1121501 BHC
15.5 years ago Rich Savage ▴ 60
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Error when trying to build a package that needs to import GO.db, GOstats, ath1121501.db packages
Annotation GO Cancer ath1121501 AnnotationDbi BHC Annotation GO Cancer ath1121501 BHC
updated 15.5 years ago by ▴ 60 • written 15.5 years ago by 25k
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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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