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bhc
•
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0
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585
views
Error on FindOptimalBinning function
bhc
error
4.1 years ago
pavel.granalacant
• 0
0
votes
0
replies
650
views
what is the role of 'itemLabels' in 'bhc' function
bhc
4.7 years ago
sk.rhyeu
• 0
1
vote
3
replies
1.6k
views
BHC crashes on a 100 samples and 4 variables
software error
bhc
updated 8.8 years ago by
Rich Savage
▴ 60 • written 8.8 years ago by
jairo
• 0
0
votes
1
reply
1.2k
views
Heatmaps in BHC package
bhc
updated 9.0 years ago by
Rich Savage
▴ 60 • written 9.3 years ago by
b.curran
• 0
0
votes
2
replies
1.4k
views
BHC breaks on simple dataset
bhc
updated 9.0 years ago by
Rich Savage
▴ 60 • written 9.1 years ago by
b.curran
• 0
0
votes
4
replies
1.1k
views
BHC appears to be broken
BHC
BHC
11.0 years ago
Joseph Viviano
▴ 20
0
votes
2
replies
1.4k
views
Error when trying to build a package that needs to import GO.db, GOstats, ath1121501.db packages
Annotation
GO
Cancer
ath1121501
AnnotationDbi
BHC
Annotation
GO
Cancer
ath1121501
BHC
updated 15.5 years ago by
Rich Savage
▴ 60 • written 15.5 years ago by
Martin Morgan
25k
0
votes
0
replies
1.1k
views
Error when trying to build a package that needs to import GO.db, GOstats, ath1121501.db packages
Annotation
GO
ath1121501
BHC
Annotation
GO
ath1121501
BHC
15.5 years ago
Rich Savage
▴ 60
8 results • Page
1 of 1
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Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions
by
JKim
• 0
cross post: https://www.biostars.org/p/9593486/
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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James W. MacDonald
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