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bigwig
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1.4k
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bigwig to counts
DESeq2
edgeR
bigwig
limma
18 months ago • updated 15 months ago
Bogdan
▴ 670
0
votes
2
replies
1.6k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 19 months ago by
complaintguide
• 0 • written 20 months ago by
Bogdan
▴ 670
0
votes
1
reply
1.3k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
2.2 years ago
bas_work
▴ 30
0
votes
5
replies
1.7k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
4.1 years ago
lsilva.m
• 0
0
votes
1
reply
1.6k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 6.5 years ago by
kaur.alasoo
▴ 30 • written 6.5 years ago by
borgmichael
• 0
3
votes
15
replies
3.0k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.1k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 7.4 years ago by
Michael Lawrence
★ 11k • written 7.4 years ago by
zx8754
▴ 10
2
votes
3
replies
1.4k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
story.benjamin
▴ 20
3
votes
9
replies
2.2k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 8.2 years ago by
laurent.lacroix
▴ 30 • written 8.2 years ago by
koneill
▴ 30
0
votes
2
replies
1.2k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
dborgesrmit
• 0
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Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
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touchstoneeduseo
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Touchstone is your gateway to English language proficiency! Our institute offers tailored courses designed to prepare students for success …
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
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Answer: OrgDb for maize
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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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