Showing : bioMart • reset
0
votes
3
replies
92
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 4 days ago by 65k • written 4 days ago by ▴ 30
2
votes
2
replies
129
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 4 days ago by 65k • written 4 days ago by • 0
0
votes
1
reply
120
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 21 days ago by 65k • written 21 days ago by • 0
0
votes
1
reply
258
views
error in mapIds function
mapIds biomaRt
updated 8 weeks ago by 690 • written 8 weeks ago by • 0
0
votes
2
replies
439
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
9 weeks ago eefernan5 • 0
3
votes
3
replies
9.3k
views
How to find rsID with biomaRt in R
biomaRt
updated 10 weeks ago by 65k • written 3.1 years ago by ▴ 10
1
vote
1
reply
210
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 10 weeks ago by • 0 • written 10 weeks ago by ▴ 10
0
votes
1
reply
204
views
biomaRt issue
biomaRt
updated 10 weeks ago by ★ 6.5k • written 10 weeks ago by • 0
1
vote
5
replies
384
views
BiomaRt download data error
biomaRt
updated 10 weeks ago by ★ 6.5k • written 11 weeks ago by • 0
6
votes
9
replies
708
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 11 weeks ago by • 0 • written 12 weeks ago by • 0
1
vote
1
reply
351
views
Error with biomaRt
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
4
votes
2
replies
341
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 3 months ago by ★ 3.9k • written 3 months ago by • 0
2
votes
2
replies
603
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
3 months ago bd2000 ▴ 30
1
vote
0
replies
182
views
News: Ensembl 111 has been released
Ensembl biomaRt
3 months ago Benjamin ▴ 30
0
votes
2
replies
368
views
Problem with loading ensembl version 105.
biomaRt
4 months ago RC • 0
0
votes
1
reply
659
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 4 months ago by 65k • written 4 months ago by • 0
0
votes
3
replies
356
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 4 months ago by ★ 3.3k • written 4 months ago by ▴ 30
4
votes
12
replies
923
views
Ensembl down???
biomaRt
4 months ago bas_work ▴ 30
3
votes
2
replies
408
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
5 months ago • updated 4 months ago henrydionne ▴ 10
1
vote
2
replies
607
views
How to find stop codons for a list of genes
stopcodon biomaRt
5 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
790
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
5 months ago • updated 7 weeks ago ScafioRuo • 0
10
votes
10
replies
6.5k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 4 weeks ago by • 0 • written 5 months ago by ▴ 10
0
votes
3
replies
457
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 5 months ago by 50k • written 5 months ago by • 0
1
vote
4
replies
647
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
6 months ago andrew.b.kleist ▴ 10
7
votes
6
replies
4.0k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 6 months ago by 690 • written 20 months ago by ▴ 20
0
votes
2
replies
354
views
Biomart - upstream region of 'coding'
biomaRt
updated 7 months ago by ★ 6.5k • written 7 months ago by ▴ 20
0
votes
0
replies
356
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
8 months ago ali.oghabian • 0
1
vote
5
replies
588
views
Errors with makeTxDbFromBiomart
biomaRt
updated 8 months ago by 65k • written 8 months ago by ▴ 10
3
votes
2
replies
1.0k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 8 months ago by ★ 3.9k • written 8 months ago by ▴ 10
0
votes
3
replies
747
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 8 months ago by 16k • written 9 months ago by • 0
1
vote
2
replies
586
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
9 months ago Miguel • 0
0
votes
1
reply
603
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 9 months ago by 65k • written 9 months ago by • 0
0
votes
1
reply
1.4k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 9 months ago by 41k • written 9 months ago by ▴ 30
0
votes
1
reply
798
views
multiple filters in biomaRt
biomaRt
updated 10 months ago by ▴ 10 • written 11 months ago by • 0
2
votes
4
replies
909
views
Use with_go along with other filters in getBM function
Annotation biomaRt
11 months ago • updated 10 months ago RuBBiT0 ▴ 10
1
vote
2
replies
771
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 10 months ago by ★ 6.5k • written 11 months ago by • 0
0
votes
3
replies
541
views
BioMart Error message when pulling sequences
biomaRt bioma
updated 12 months ago by ★ 6.5k • written 12 months ago by • 0
0
votes
3
replies
1.3k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 12 months ago by ▴ 30
0
votes
1
reply
1.3k
views
biomaRt - NameSpace loading failed
biomaRt bioma
updated 12 months ago by ★ 6.5k • written 12 months ago by • 0
0
votes
3
replies
653
views
BiomaRt: problems annotating a list of DEGs from DESeq2
biomaRt
updated 12 months ago by 41k • written 12 months ago by • 0
0
votes
2
replies
1.0k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 12 months ago by ★ 2.0k • written 12 months ago by • 0
0
votes
3
replies
695
views
How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt SNP
updated 13 months ago by 65k • written 13 months ago by • 0
0
votes
2
replies
745
views
Retrieving true orthologs between species BiomaRt
Orthologs BiomaRt
updated 13 months ago by 65k • written 13 months ago by • 0
0
votes
5
replies
2.3k
views
Is biomaRt down?
biomart
updated 13 months ago by • 0 • written 5.3 years ago by • 0
0
votes
4
replies
934
views
Write an annotated DESEQ2 counts CSV, pls help.
DESeq2 biomaRt R
14 months ago Dr. • 0
0
votes
0
replies
679
views
BiomaRt - Problem to access homolog lists
biomaRt ensembldb
14 months ago ginie.dub • 0
3
votes
3
replies
1.6k
views
transcript name mapping between human and mouse
biomaRt getLDS
updated 15 months ago by 65k • written 15 months ago by ▴ 20
5
votes
3
replies
1.4k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt ensembldb ensembl
18 months ago • updated 15 months ago jamie.gearing ▴ 60
1
vote
4
replies
707
views
mmc57bl6nj_gene_ensembl biomaRt
biomaRt
15 months ago Maryam • 0
1
vote
3
replies
808
views
Convert Chromosome postion to gene symbol
biomaRt ensembldb
16 months ago mbansal • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: minfi::read.metharray.exp by clacarion • 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19 by shepherl 3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …
Votes
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
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