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bioc-devel
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2
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1.2k
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Segmentation Fault with development versions of R, Bioconductor, and DropletUtils when processing output of CellRanger 3.0.2
DropletUtils
Bioc-devel
5.0 years ago
Matthew Thornton
▴ 350
0
votes
2
replies
1.3k
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 5.5 years ago by
shepherl
3.8k • written 5.5 years ago by
Tim Triche
★ 4.2k
3
votes
6
replies
2.1k
views
Bioconductor Docker Development container
docker
bioc-devel
updated 8.9 years ago by
Dan Tenenbaum
★ 8.2k • written 8.9 years ago by
Nathan Sheffield
▴ 10
1
vote
1
reply
1.7k
views
Using hash packages with package:rtracklayer, GenomicRanges, Gviz, IRanges, biomaRt conflict
software error
bioc-devel
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
Tiphaine Martin
▴ 40
5
votes
3
replies
1.6k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
8.9 years ago
flying-sheep
▴ 10
1
vote
3
replies
1.6k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 8.4 years ago by
Dan Tenenbaum
★ 8.2k • written 8.4 years ago by
MarcinKosiński
• 0
6
votes
3
replies
2.6k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 6.5 years ago by
Lluís Revilla Sancho
▴ 730 • written 6.5 years ago by
Paul Brennan
▴ 10
3
votes
2
replies
1.1k
views
Changing lead developer for existing package
developers
bioc-devel
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
mlbendall
• 0
2
votes
8
replies
3.5k
views
Unable to load/install rtracklayer (v1.33.2) on OS X (possibly SSL-related?)
rtracklayer
bioc-devel
ssl
openssl
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
Peter Hickey
▴ 740
0
votes
1
reply
2.0k
views
installation of GenomicRanges package in Rdevel fails
installation
bioc-devel
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
Tiphaine Martin
▴ 40
3
votes
1
reply
2.1k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
6.0 years ago
Alejandro Reyes
★ 1.9k
0
votes
0
replies
2.2k
views
Tutorial:
Using Subversion to update /devel branch of Bioconductor package
subversion
bioc-devel
package development
usedevel
Tutorial
6.7 years ago
Bohdan Khomtchouk
▴ 10
1
vote
5
replies
1.1k
views
[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
5.4 years ago
Casper van Mourik
• 0
0
votes
2
replies
2.1k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
9.1 years ago
mjsduncan
• 0
14 results • Page
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Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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