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bioc
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can't update bioconductor 3.18
BioCor
bioc
BiocVersion
6 months ago
feifan
• 0
1
vote
2
replies
640
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News:
Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
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BioCAsia
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BioC
written 17 months ago by
Peter Hickey
▴ 740
0
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1
reply
803
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JAVA_HOME cannot be determined on Windows on Bioconductor platform report
bioc
Bioconductor
updated 2.5 years ago by
Hervé Pagès
16k • written 2.5 years ago by
cannin
▴ 20
0
votes
1
reply
1.9k
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Multiple R versions
R
bioc
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
pawan12394
• 0
0
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5
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1.7k
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BioC happening in 2018?
BioC
2018
Course
6.7 years ago
s.munster
▴ 40
0
votes
1
reply
1.5k
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Errors installing RforProteomics
Bioc
package installation
rforproteomics
updated 8.1 years ago by
Laurent Gatto
1.6k • written 8.1 years ago by
sarahgrogan
• 0
6 results • Page
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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