Showing : biocLIte • reset
9
votes
6
replies
9.4k
views
What's the deal with biocLite's "Update all/some/none? [a/s/n]"?
bioclite
7.7 years ago kjo ▴ 70
8
votes
4
replies
6.9k
views
Can't upgrade to Bioconductor 3.3?
bioconductor biocupgrade upgrade update bioclite
7.9 years ago enricoferrero ▴ 660
6
votes
8
replies
7.8k
views
Problem installing BiocGenerics
software error BioGenerics bioclite
6.5 years ago p.janitza ▴ 50
6
votes
2
replies
1.8k
views
BiocUpgrade without being promped to confirm
bioclite biocinstaller biocupgrade
updated 9.4 years ago by ★ 8.2k • written 9.4 years ago by ▴ 50
6
votes
2
replies
1.7k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite package installation installation install
updated 6.2 years ago by ★ 6.5k • written 6.2 years ago by ▴ 10
6
votes
3
replies
12k
views
Why package "BiocLite" is not available (for R version 3.6.1)
biocLite
updated 4.4 years ago by 3.8k • written 4.4 years ago by • 0
5
votes
4
replies
5.5k
views
Problem using BiocUpgrade
update bioclite
updated 9.5 years ago by ★ 8.2k • written 9.5 years ago by • 0
5
votes
11
replies
2.7k
views
Error while installing Phyloseq using biocLite
bioclite phyloseq install error
5.5 years ago khp ▴ 30
5
votes
5
replies
2.2k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite package installation withr biocinstaller rhtslib
updated 5.6 years ago by 25k • written 5.6 years ago by ▴ 120
4
votes
4
replies
7.6k
views
Problems install R XML package on CentOS 7
r packages centos7 bioclite libxml2
updated 6.6 years ago by ▴ 120 • written 6.6 years ago by ▴ 10
4
votes
2
replies
3.8k
views
Cannot load or update GO.db
GO.db bioclite
9.0 years ago Steve Pederson ▴ 170
3
votes
5
replies
1.7k
views
GO.db installation fails (MacOS, AnnotationDbi, R3.5.0)
GO bioclite R3.5 mac os x annotationdbi
updated 5.9 years ago by 25k • written 5.9 years ago by ▴ 30
3
votes
2
replies
16k
views
biocLite R Version
biocLite
updated 3.5 years ago by 690 • written 3.5 years ago by • 0
2
votes
2
replies
8.1k
views
biocLite() fails to update packages when main library not writable
bioclite package updates
updated 9.1 years ago by ★ 8.2k • written 9.1 years ago by ★ 2.0k
2
votes
10
replies
6.0k
views
Install older specific version from an R package that is on the Bioconductor Repository
Bioconductor biocLite R packages oldversion
8.4 years ago svlachavas ▴ 830
2
votes
2
replies
4.5k
views
Help with installing biocLite.R
biocLite biocinstaller
9.0 years ago thomas.mohr ▴ 20
2
votes
6
replies
36k
views
Installing Bioclite.R Package
Bioclite install
8.4 years ago louiseapps2 • 0
2
votes
6
replies
1.4k
views
DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
bioclite bioconductor summarizeoverlaps genomicfeatures genomicalignments
updated 7.4 years ago by 41k • written 7.4 years ago by • 0
2
votes
1
reply
1.3k
views
problems in biocLite
biocLite installation
updated 9.5 years ago by 25k • written 9.5 years ago by • 0
2
votes
5
replies
1.5k
views
Upgrade to 3.6 - can't seem to get past Bioconductor 3.5
bioconductor bioclite
updated 6.5 years ago by 3.8k • written 6.5 years ago by ▴ 10
2
votes
1
reply
4.6k
views
Upgrade to Bioconductor 3.4 - problems with R
r update upgrade bioclite
updated 7.4 years ago by 65k • written 7.4 years ago by • 0
2
votes
2
replies
1.0k
views
biocLite doesn't work
bioconductor bioclite
updated 5.5 years ago by 3.8k • written 5.5 years ago by • 0
1
vote
3
replies
1.5k
views
Error biocLite() newest version of ChAMP
R bioclite champ
6.0 years ago rosa_hegi ▴ 10
1
vote
4
replies
1.1k
views
devel version: rtracklayer depends on GenomicRanges 1.19.3 but that's not available
rtracklayer genomicranges bioclite
updated 9.5 years ago by ★ 7.2k • written 9.5 years ago by ▴ 740
1
vote
4
replies
1.8k
views
Problem installing Bioconductor
biocLite
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
1
vote
2
replies
1.5k
views
how to load edgeR each time I start R?
edger bioclite installation
updated 8.7 years ago by 65k • written 8.7 years ago by • 0
1
vote
2
replies
1.8k
views
Trouble Installing Bioconductor Basic Packages
R bioclite installation problem linuxmint virtualbox
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
1
vote
3
replies
1.4k
views
graphite functions missing, installed version is out of date
graphite bioclite
8.8 years ago mhlinder • 0
1
vote
3
replies
2.0k
views
update all/some/none how to set default to "update all"
biocLite update all default ask
updated 5.2 years ago by ▴ 30 • written 5.2 years ago by ▴ 10
1
vote
2
replies
918
views
bioclite behaviour with defunct packages
bioclite
8.4 years ago David.Duffy ▴ 10
1
vote
2
replies
3.5k
views
dyld: Library not loaded: @rpath/libc++abi.1.dylib
DESeq2 biocLite
updated 6.0 years ago by ★ 6.5k • written 6.0 years ago by • 0
1
vote
2
replies
3.4k
views
BiocLite installation issues
BiocLite
updated 3.6 years ago by ★ 3.9k • written 3.6 years ago by ▴ 10
1
vote
2
replies
1.5k
views
error in sourcing biocLite: Error in get(".BioC_version_associated_with_R_version", envir = asNamespace("tools")
bioclite
9.0 years ago melanie.shook • 0
1
vote
1
reply
3.6k
views
status was 'Couldn't connect to server': bioClite
bioclite
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
1
vote
1
reply
1.6k
views
Problem with installing "biocLite" and "Monocle" with R 4.2.0
biocLite
updated 23 months ago by ★ 6.5k • written 23 months ago by • 0
0
votes
2
replies
1.4k
views
Unable to install Bioconductor packages following R upgrade to 3.5.1
bioclite bioconductor
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
0
votes
1
reply
986
views
I have installed bioconductor, R still asks me to install it
bioconductor biocLite GEOquery package
updated 4.3 years ago by ★ 13k • written 4.3 years ago by • 0
0
votes
1
reply
939
views
Problem with installing "biocLite" using R4.2.0
biocLite
updated 23 months ago by ▴ 730 • written 23 months ago by • 0
0
votes
1
reply
1.2k
views
Is there a way to revert from usedevel() mode in bioconductor
usedevel bioclite
updated 9.6 years ago by ★ 13k • written 9.6 years ago by • 0
0
votes
1
reply
1.9k
views
Warning messages with biocLite()
bioclite
9.4 years ago Robert Baer ▴ 70
0
votes
5
replies
4.1k
views
FactoMineR failed after installing Bioconductor
software error factomineR bioclite
updated 8.9 years ago by 25k • written 8.9 years ago by • 0
0
votes
3
replies
1.5k
views
biocLite on R 3.2.0 stalls then vanishes
software error bioclite
updated 8.9 years ago by ★ 8.2k • written 8.9 years ago by • 0
0
votes
4
replies
2.0k
views
update packages when installing a new package
bioclite package updates
updated 8.9 years ago by ★ 8.2k • written 8.9 years ago by ▴ 680
0
votes
1
reply
1.8k
views
Questions regarding removal and following re-installation of a specific R package using a custom library path
package installation custom library path biocLite bioconductor
8.6 years ago svlachavas ▴ 830
0
votes
4
replies
6.0k
views
Error in biocLite("BiocUpgrade") when trying to update to latest release
biocinstaller bioclite
updated 8.5 years ago by ★ 8.2k • written 8.5 years ago by ▴ 870
0
votes
5
replies
2.0k
views
openCyto fails to load
opencyto bioclite
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 20
0
votes
4
replies
3.1k
views
Impossible to use goseq package - problem with geneLenDataBase
goseq geneLenDataBase bioclite rstudio
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 10
0
votes
6
replies
2.6k
views
Problems installing BiocLite on Fedora 23, R 3.2.2
bioclite gcc install fedora
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 20
0
votes
1
reply
2.4k
views
Bioconductor installation problem
installation biocLite
updated 8.3 years ago by 25k • written 8.3 years ago by ▴ 10
0
votes
3
replies
1.3k
views
Prevent biocLite() from asking to update packages every time it's used
bioclite package installation package updates
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 40
50 results • Page 1 of 1
Recent ...
Replies
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by sredemption • 0
Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you for your reply and I know there is another post similar to this you had mentioned this. How are the genes that I mentioned in the…
Votes
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
Awards • All
Popular Question to sropri • 0
Popular Question to W. Evan Johnson ▴ 850
Popular Question to Alejandro Reyes ★ 1.9k
Popular Question to shepherl 3.8k
Popular Question to Alessia • 0
Locations • All
Mexico, 1 minute ago
United States, 9 minutes ago
France, 10 minutes ago
United States, 39 minutes ago
United States, 42 minutes ago
Traffic: 720 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6