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bioccheck
•
reset
7
votes
2
replies
1.1k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 2.5 years ago by
ZheFrench
▴ 40
5
votes
2
replies
910
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 2.3 years ago by
Steve Lianoglou
★ 13k • written 2.4 years ago by
pouryany
• 0
0
votes
2
replies
894
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
2.9 years ago • updated 2.8 years ago
ullrich
▴ 20
0
votes
2
replies
674
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 2.9 years ago by
shepherl
3.8k • written 3.0 years ago by
wewolski
▴ 10
0
votes
2
replies
1.4k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
3.3 years ago
Hector
• 0
0
votes
1
reply
824
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
zhezhenwang
• 0
1
vote
2
replies
1.8k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
4.7 years ago
j.flesch
▴ 10
0
votes
12
replies
1.1k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
4.8 years ago
waterincan
• 0
0
votes
2
replies
881
views
BiocCheck package size
BiocCheck
updated 4.9 years ago by
Hervé Pagès
16k • written 4.9 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
4.2k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 5.8 years ago by
shepherl
3.8k • written 5.8 years ago by
xyluo1991
• 0
2
votes
5
replies
1.9k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 5.8 years ago by
Marcel Ramos
690 • written 7.9 years ago by
richierocks
▴ 40
0
votes
1
reply
1.3k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
6.4 years ago
Paul Brennan
▴ 10
6
votes
3
replies
2.5k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 6.4 years ago by
Lluís Revilla Sancho
▴ 730 • written 6.4 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.2k
views
BiocCheck path escape issue
bioccheck
bug
6.9 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
860
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
ihnatova
• 0
2
votes
10
replies
2.3k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 18 months ago by
Marek Gierlinski
▴ 30 • written 7.4 years ago by
david.a.quigley
• 0
0
votes
1
reply
1.3k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.0 years ago
kmezhoud
▴ 10
1
vote
3
replies
1.8k
views
Man pages with runnable examples calculation
BiocCheck
updated 8.1 years ago by
Dan Tenenbaum
★ 8.2k • written 8.1 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
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Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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