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bioccheck
•
reset
0
votes
12
replies
1.1k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
4.9 years ago
waterincan
• 0
2
votes
10
replies
2.3k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 19 months ago by
Marek Gierlinski
▴ 30 • written 7.5 years ago by
david.a.quigley
• 0
4
votes
6
replies
4.2k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 5.8 years ago by
shepherl
3.8k • written 5.8 years ago by
xyluo1991
• 0
2
votes
5
replies
1.9k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 5.8 years ago by
Marcel Ramos
690 • written 7.9 years ago by
richierocks
▴ 40
6
votes
3
replies
2.6k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 6.5 years ago by
Lluís Revilla Sancho
▴ 730 • written 6.5 years ago by
Paul Brennan
▴ 10
1
vote
3
replies
1.8k
views
Man pages with runnable examples calculation
BiocCheck
updated 8.2 years ago by
Dan Tenenbaum
★ 8.2k • written 8.2 years ago by
liz.ingsimmons
▴ 140
0
votes
2
replies
701
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 3.0 years ago by
shepherl
3.8k • written 3.0 years ago by
wewolski
▴ 10
1
vote
2
replies
1.2k
views
BiocCheck path escape issue
bioccheck
bug
7.0 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
872
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
ihnatova
• 0
0
votes
2
replies
898
views
BiocCheck package size
BiocCheck
updated 5.0 years ago by
Hervé Pagès
16k • written 5.0 years ago by
zhang.jianhai
▴ 10
7
votes
2
replies
1.1k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 2.6 years ago by
ZheFrench
▴ 40
0
votes
2
replies
912
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
2.9 years ago
ullrich
▴ 20
5
votes
2
replies
926
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 2.4 years ago by
Steve Lianoglou
★ 13k • written 2.4 years ago by
pouryany
• 0
1
vote
2
replies
1.8k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
4.7 years ago
j.flesch
▴ 10
0
votes
2
replies
1.5k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
3.4 years ago
Hector
• 0
0
votes
1
reply
1.3k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
6.5 years ago
Paul Brennan
▴ 10
0
votes
1
reply
1.3k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.0 years ago
kmezhoud
▴ 10
0
votes
1
reply
841
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 4.7 years ago by
James W. MacDonald
65k • written 4.7 years ago by
zhezhenwang
• 0
18 results • Page
1 of 1
Recent ...
Replies
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Answer: get BM error
by
James W. MacDonald
65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Comment: Different Shrunk Log2FC according with reference
by
Michael Love
41k
I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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