Biostar Biocfilecache

Showing : biocfilecache • reset

votes

replies

635

views

BiocFileCache

9 months ago • updated 5 months ago kent.riemondy • 0

vote

replies

945

views

BiocFileCache biomaRt

updated 11 months ago by Martin Morgan 25k • written 11 months ago by ZheFrench ▴ 40

votes

403

views

BiocFileCache

updated 18 months ago by Mike Smith ★ 6.0k • written 18 months ago by pierrick.roger • 0

votes

replies

721

views

tximeta BiocFileCache

updated 23 months ago by Michael Love 39k • written 23 months ago by judith.risse • 0

votes

643

views

BiocFileCache AnnotationHub ExperimentHub cache

23 months ago shepherl 3.4k

votes

replies

395

views

BiocFileCache

updated 3.0 years ago by shepherl 3.4k • written 3.0 years ago by Qiang ▴ 70

6 results • Page 1 of 1

Recent ...

Replies

Comment: Definition of disease_subtype abbreviations by Lucas Schiffer ▴ 240

Hi Sehyun, I do not know myself and can only find one reference in the [template.csv](https://github.com/waldronlab/curatedMetagenomicDataC…

Answer: Are polynomial contrasts for a time factor possible in DESeq2? by ATpoint ★ 2.3k

As you can use a model.matrix() as input for the design you can use a great variety of models. A great read is this work from Ritchie/Smyth…

Comment: does anyone how to create rarefaction curves from a phyloseq object? by RMiller • 0

I am not sure what you have tried, but the "vegan" library (package) has the ability to do rarefaction. So make sure to load `library("veg…

Answer: MSA package fails to be installed - installation of package ‘msa’ had non-zero by stitam • 0

Hi, I came across the same issue when trying to install `msa` in a docker (singularity) container. My base image was `debian:bullseye-20230…

Comment: deseq2 nested multifactorial analysis by Basti ▴ 700

The information on genotype is included in the condition : all Control_1 are A, all Control_2 are B The condition variable is sufficient to…

Votes

Are polynomial contrasts for a time factor possible in DESeq2?

Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

A: Pathway analysis of differentially methylated CpGs

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

Awards • All

Popular Question to Robert Castelo ★ 3.0k