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biocfilecache
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reset
6
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9
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4.5k
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BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
updated 5 weeks ago by
Melissa
• 0 • written 5 months ago by
shepherl
3.8k
3
votes
6
replies
1.2k
views
Caching bam index files using BiocFileCache
BiocFileCache
22 months ago • updated 18 months ago
kent.riemondy
▴ 20
1
vote
8
replies
2.4k
views
biomaRt : No lock file for BiocFileCache
BiocFileCache
biomaRt
updated 2.0 years ago by
Martin Morgan
25k • written 2.0 years ago by
ZheFrench
▴ 40
0
votes
3
replies
682
views
How to keep remote file name by bfcadd in BiocFileCache?
BiocFileCache
updated 4.1 years ago by
shepherl
3.8k • written 4.1 years ago by
Qiang
▴ 80
0
votes
2
replies
1.2k
views
Failure to save txDb using saveDb in BiocFileCache location other than /tmp
tximeta
BiocFileCache
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
judith.risse
• 0
0
votes
1
reply
1.1k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.0 years ago
shepherl
3.8k
0
votes
1
reply
630
views
Importing more than 100,000 at once into BiocFileCache
BiocFileCache
updated 2.6 years ago by
Mike Smith
★ 6.5k • written 2.6 years ago by
pierrick.roger
• 0
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Answer: Log-cpm values from limma
by
Gordon Smyth
50k
The log-cpm values from voom() are not free of batch effect. If you want batch-corrected log-cpm values, we recommend cpm() followed by rem…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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