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BiocFileCache biomaRt

updated 11 months ago by Martin Morgan 25k • written 11 months ago by ZheFrench ▴ 40

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BiocFileCache

9 months ago • updated 5 months ago kent.riemondy • 0

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BiocFileCache

updated 3.0 years ago by shepherl 3.4k • written 3.0 years ago by Qiang ▴ 70

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tximeta BiocFileCache

updated 23 months ago by Michael Love 39k • written 23 months ago by judith.risse • 0

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BiocFileCache AnnotationHub ExperimentHub cache

23 months ago shepherl 3.4k

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BiocFileCache

updated 18 months ago by Mike Smith ★ 6.0k • written 18 months ago by pierrick.roger • 0

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Comment: does anyone how to create rarefaction curves from a phyloseq object? by RMiller • 0

I am not sure what you have tried, but the "vegan" library (package) has the ability to do rarefaction. So make sure to load `library("veg…

Answer: MSA package fails to be installed - installation of package ‘msa’ had non-zero by stitam • 0

Hi, I came across the same issue when trying to install `msa` in a docker (singularity) container. My base image was `debian:bullseye-20230…

Comment: deseq2 nested multifactorial analysis by Basti ▴ 700

The information on genotype is included in the condition : all Control_1 are A, all Control_2 are B The condition variable is sufficient to…

Comment: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R by Yang Shi ▴ 10

Thanks for your reply sir!

Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by Rory Stark ★ 4.6k

`dba.count()` counts reads overlapping consensus regions. After that, the original peak scores are ignored. All quantitative analysis (via …

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Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

A: Pathway analysis of differentially methylated CpGs

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

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Popular Question to Robert Castelo ★ 3.0k