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biocgenerics
•
reset
3
votes
3
replies
164
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
11 days ago • updated 6 days ago
jacques.imbert
• 0
2
votes
4
replies
592
views
BiocGenerics binary is outdated for macOS ARM
BiocGenerics
10 months ago
Michael Steinbaugh
▴ 90
1
vote
1
reply
543
views
BiocGenerics package: 404 error during R shiny app deployment
BiocGenerics
ddCt
updated 13 months ago by
dr
▴ 10 • written 14 months ago by
Arielle
▴ 10
1
vote
7
replies
1.6k
views
DESeqDataSetFromMatrix error
BiocGenerics
DESeq2
DEGreport
RNASeqData
DEG
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
Diya
• 0
2
votes
2
replies
2.9k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 3.2 years ago by
Martin Morgan
25k • written 3.2 years ago by
tina
• 0
0
votes
2
replies
4.9k
views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2
pheatmap
RColorBrewer
BiocGenerics
updated 3.9 years ago by
Michael Love
41k • written 3.9 years ago by
matthewzli777
• 0
2
votes
2
replies
1.9k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges
oligoclasses
BiocGenerics
5.8 years ago
GENOMIC_region
• 0
2
votes
1
reply
1.1k
views
Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome
biocgenerics
bsapply
export
updated 6.2 years ago by
James W. MacDonald
65k • written 6.2 years ago by
ረ
• 0
1
vote
6
replies
1.6k
views
Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
BiocGenerics
6.2 years ago
rea
▴ 10
1
vote
4
replies
2.5k
views
biocLite updating problem with Ubuntu 17.10
ubuntu
biocgenerics
s4vectors
IRanges
annotationdbi
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
KRA
• 0
0
votes
4
replies
2.2k
views
Biocgenerics updating problem on ubuntu 17.10
bioconductor
biocgenerics
ubuntu
package updates
r update
6.4 years ago
siinemselvi
• 0
7
votes
4
replies
2.1k
views
BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics
iranges
variantannotation
updated 6.6 years ago by
Hervé Pagès
16k • written 6.6 years ago by
ginggs
▴ 40
6
votes
6
replies
1.5k
views
Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges
biocgenerics
rlelist
genomicvars
iranges
updated 6.6 years ago by
Hervé Pagès
16k • written 6.6 years ago by
Devin King
▴ 20
0
votes
1
reply
1.1k
views
BiocGenerics paste strange behavior (bug?)
biocgenerics
6.7 years ago
Peter Langfelder
★ 3.0k
0
votes
2
replies
1.5k
views
replacing previous import stats::mad by BiocGenerics::mad when loading IRanges
iranges
biocgenerics
dirichletmultinomial
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
nick
• 0
2
votes
3
replies
1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor
merge data frames
combine
biocgenerics
8.5 years ago • updated 5 months ago
Konstantinos Yeles
▴ 80
0
votes
4
replies
2.3k
views
Access to BiocGenerics 0.11.4 package
BiocGenerics
updated 9.6 years ago by
James W. MacDonald
65k • written 9.6 years ago by
gregory voisin
▴ 430
0
votes
0
replies
1.2k
views
答复: 答复: 答复: problem with \"readCufflinks\"
cummeRbund
BiocGenerics
cummeRbund
BiocGenerics
10.0 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
3.3k
views
Problem installing BiocGenerics package
BiocGenerics
BiocGenerics
updated 10.3 years ago by
Dan Tenenbaum
★ 8.2k • written 10.3 years ago by
Guest User
★ 13k
0
votes
2
replies
2.6k
views
Trouble installing BiocGenerics
BiocGenerics
BiocGenerics
10.3 years ago
Andreas Leha
▴ 30
0
votes
0
replies
1.7k
views
BiocGenerics::plotMA (was: "egdeR troubles under new R 3.02")
BiocGenerics
BiocGenerics
10.5 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
2.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure
Cancer
Biobase
tkWidgets
globaltest
BiocInstaller
BiocGenerics
Cancer
updated 11.1 years ago by
Martin Morgan
25k • written 11.1 years ago by
Shields, Rusty IMS
▴ 40
0
votes
14
replies
2.9k
views
BiocGenerics 0.5.6 not loading properly
Rsamtools
BiocGenerics
Rsamtools
BiocGenerics
updated 11.1 years ago by
Dan Tenenbaum
★ 8.2k • written 11.1 years ago by
TriS
▴ 200
0
votes
2
replies
1.6k
views
GSEABase error parsing msigdb_v3.1.xml
GO
Infrastructure
hgu95av2
Biobase
annotate
graph
Category
AnnotationDbi
BiocGenerics
GO
updated 11.2 years ago by
Martin Morgan
25k • written 11.2 years ago by
Lina Hultin-Rosenberg
▴ 80
0
votes
8
replies
2.0k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer
IRanges
BiocGenerics
Cancer
IRanges
BiocGenerics
updated 11.4 years ago by
Michael Lawrence
★ 11k • written 11.4 years ago by
Hervé Pagès
16k
0
votes
1
reply
972
views
Problem installing CummeRbund 2.0.0 (BiocGenerics)
BiocGenerics
BiocGenerics
updated 11.5 years ago by
Dan Tenenbaum
★ 8.2k • written 11.5 years ago by
Fluder, Eugene
▴ 10
26 results • Page
1 of 1
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Replies
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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