Showing : biocgenerics • reset
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2.9k
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BiocGenerics 0.5.6 not loading properly
Rsamtools BiocGenerics Rsamtools BiocGenerics
updated 11.1 years ago by ★ 8.2k • written 11.1 years ago by ▴ 200
0
votes
8
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2.0k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer IRanges BiocGenerics Cancer IRanges BiocGenerics
updated 11.4 years ago by ★ 11k • written 11.4 years ago by 16k
1
vote
7
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1.6k
views
DESeqDataSetFromMatrix error
BiocGenerics DESeq2 DEGreport RNASeqData DEG
updated 21 months ago by 65k • written 21 months ago by • 0
6
votes
6
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1.5k
views
Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges biocgenerics rlelist genomicvars iranges
updated 6.6 years ago by 16k • written 6.6 years ago by ▴ 20
1
vote
6
replies
1.6k
views
Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
BiocGenerics
6.2 years ago rea ▴ 10
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4
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2.2k
views
Biocgenerics updating problem on ubuntu 17.10
bioconductor biocgenerics ubuntu package updates r update
6.4 years ago siinemselvi • 0
0
votes
4
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2.3k
views
Access to BiocGenerics 0.11.4 package
BiocGenerics
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 430
7
votes
4
replies
2.1k
views
BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics iranges variantannotation
updated 6.6 years ago by 16k • written 6.6 years ago by ▴ 40
1
vote
4
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2.5k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
2
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4
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591
views
BiocGenerics binary is outdated for macOS ARM
BiocGenerics
10 months ago Michael Steinbaugh ▴ 90
3
votes
3
replies
164
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array BiocGenerics BiocParallel Biobase
11 days ago • updated 5 days ago jacques.imbert • 0
2
votes
3
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1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.5 years ago • updated 5 months ago Konstantinos Yeles ▴ 80
0
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2
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2.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 40
0
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2
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2.6k
views
Trouble installing BiocGenerics
BiocGenerics BiocGenerics
10.3 years ago Andreas Leha ▴ 30
0
votes
2
replies
3.3k
views
Problem installing BiocGenerics package
BiocGenerics BiocGenerics
updated 10.3 years ago by ★ 8.2k • written 10.3 years ago by ★ 13k
0
votes
2
replies
1.5k
views
replacing previous import stats::mad by BiocGenerics::mad when loading IRanges
iranges biocgenerics dirichletmultinomial
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
0
votes
2
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1.6k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 11.2 years ago by 25k • written 11.2 years ago by ▴ 80
2
votes
2
replies
1.9k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
5.8 years ago GENOMIC_region • 0
0
votes
2
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4.9k
views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 3.9 years ago by 41k • written 3.9 years ago by • 0
2
votes
2
replies
2.9k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR Bioconductor DiffBind BiocGenerics
updated 3.2 years ago by 25k • written 3.2 years ago by • 0
0
votes
1
reply
972
views
Problem installing CummeRbund 2.0.0 (BiocGenerics)
BiocGenerics BiocGenerics
updated 11.5 years ago by ★ 8.2k • written 11.5 years ago by ▴ 10
1
vote
1
reply
543
views
BiocGenerics package: 404 error during R shiny app deployment
BiocGenerics ddCt
updated 13 months ago by ▴ 10 • written 14 months ago by ▴ 10
0
votes
1
reply
1.1k
views
BiocGenerics paste strange behavior (bug?)
biocgenerics
6.7 years ago Peter Langfelder ★ 3.0k
2
votes
1
reply
1.1k
views
Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome biocgenerics bsapply export
updated 6.2 years ago by 65k • written 6.2 years ago by • 0
0
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0
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1.7k
views
BiocGenerics::plotMA (was: "egdeR troubles under new R 3.02")
BiocGenerics BiocGenerics
10.5 years ago Wolfgang Huber ★ 13k
0
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0
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1.2k
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答复: 答复: 答复: problem with \"readCufflinks\"
cummeRbund BiocGenerics cummeRbund BiocGenerics
10.0 years ago Dan Tenenbaum ★ 8.2k
26 results • Page 1 of 1
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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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