Showing : biocgenerics • reset
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plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 3.9 years ago by 41k • written 3.9 years ago by • 0
0
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2
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3.3k
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Problem installing BiocGenerics package
BiocGenerics BiocGenerics
updated 10.2 years ago by ★ 8.2k • written 10.2 years ago by ★ 13k
2
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2
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2.9k
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DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR Bioconductor DiffBind BiocGenerics
updated 3.2 years ago by 25k • written 3.2 years ago by • 0
0
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14
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2.9k
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BiocGenerics 0.5.6 not loading properly
Rsamtools BiocGenerics Rsamtools BiocGenerics
updated 11.1 years ago by ★ 8.2k • written 11.1 years ago by ▴ 200
0
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2
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2.6k
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Trouble installing BiocGenerics
BiocGenerics BiocGenerics
10.3 years ago Andreas Leha ▴ 30
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2
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[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 40
1
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4
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2.5k
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biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
0
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4
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2.3k
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Access to BiocGenerics 0.11.4 package
BiocGenerics
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 430
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4
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Biocgenerics updating problem on ubuntu 17.10
bioconductor biocgenerics ubuntu package updates r update
6.4 years ago siinemselvi • 0
7
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4
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2.1k
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BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics iranges variantannotation
updated 6.5 years ago by 16k • written 6.6 years ago by ▴ 40
0
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8
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IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer IRanges BiocGenerics Cancer IRanges BiocGenerics
updated 11.4 years ago by ★ 11k • written 11.4 years ago by 16k
2
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2
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1.9k
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IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
5.8 years ago GENOMIC_region • 0
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BiocGenerics::plotMA (was: "egdeR troubles under new R 3.02")
BiocGenerics BiocGenerics
10.5 years ago Wolfgang Huber ★ 13k
1
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6
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Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
BiocGenerics
6.2 years ago rea ▴ 10
0
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2
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1.6k
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GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 11.2 years ago by 25k • written 11.2 years ago by ▴ 80
1
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7
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1.6k
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DESeqDataSetFromMatrix error
BiocGenerics DESeq2 DEGreport RNASeqData DEG
updated 21 months ago by 65k • written 21 months ago by • 0
6
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6
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1.5k
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Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges biocgenerics rlelist genomicvars iranges
updated 6.6 years ago by 16k • written 6.6 years ago by ▴ 20
0
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1.5k
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replacing previous import stats::mad by BiocGenerics::mad when loading IRanges
iranges biocgenerics dirichletmultinomial
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
2
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3
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1.2k
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Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.5 years ago • updated 5 months ago Konstantinos Yeles ▴ 80
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1.2k
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答复: 答复: 答复: problem with \"readCufflinks\"
cummeRbund BiocGenerics cummeRbund BiocGenerics
10.0 years ago Dan Tenenbaum ★ 8.2k
0
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1
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1.1k
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BiocGenerics paste strange behavior (bug?)
biocgenerics
6.7 years ago Peter Langfelder ★ 3.0k
2
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1
reply
1.1k
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Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome biocgenerics bsapply export
updated 6.1 years ago by 65k • written 6.2 years ago by • 0
0
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1
reply
971
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Problem installing CummeRbund 2.0.0 (BiocGenerics)
BiocGenerics BiocGenerics
updated 11.5 years ago by ★ 8.2k • written 11.5 years ago by ▴ 10
2
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4
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582
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BiocGenerics binary is outdated for macOS ARM
BiocGenerics
10 months ago Michael Steinbaugh ▴ 90
1
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1
reply
541
views
BiocGenerics package: 404 error during R shiny app deployment
BiocGenerics ddCt
updated 12 months ago by ▴ 10 • written 14 months ago by ▴ 10
3
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3
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137
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Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array BiocGenerics BiocParallel Biobase
7 days ago • updated 1 day ago jacques.imbert • 0
26 results • Page 1 of 1
Recent ...
Replies
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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