Showing : bioclIte • reset
0
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2.8k
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Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 6.6 years ago by ★ 1.3k • written 7.0 years ago by ▴ 70
5
votes
4
replies
5.6k
views
Problem using BiocUpgrade
update bioclite
updated 9.9 years ago by ★ 8.2k • written 9.9 years ago by • 0
0
votes
9
replies
3.7k
views
Upgrade bioconductor 3.2 to 3.3
bioclIte tximportData
updated 6.6 years ago by ▴ 80 • written 8.2 years ago by ▴ 40
0
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5
replies
2.1k
views
openCyto fails to load
opencyto bioclite
updated 8.9 years ago by • 0 • written 8.9 years ago by ▴ 20
0
votes
2
replies
1.9k
views
How to permanently add custom repositories to BiocLite
bioclite repository repos
7.0 years ago arnau.bria • 0
6
votes
2
replies
1.9k
views
BiocUpgrade without being promped to confirm
bioclite biocinstaller biocupgrade
updated 9.8 years ago by ★ 8.2k • written 9.8 years ago by ▴ 50
2
votes
6
replies
36k
views
Installing Bioclite.R Package
Bioclite install
8.8 years ago louiseapps2 • 0
6
votes
3
replies
12k
views
Why package "BiocLite" is not available (for R version 3.6.1)
biocLite
updated 4.8 years ago by 4.0k • written 4.8 years ago by • 0
1
vote
3
replies
1.6k
views
graphite functions missing, installed version is out of date
graphite bioclite
9.2 years ago mhlinder • 0
1
vote
3
replies
2.3k
views
update all/some/none how to set default to "update all"
biocLite update all default ask
updated 5.6 years ago by ▴ 30 • written 5.6 years ago by ▴ 10
0
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2
replies
2.1k
views
Issues installing packages miniconda environment
bioclite deseq2 miniconda packages
6.5 years ago cpat • 0
3
votes
2
replies
19k
views
biocLite R Version
biocLite
updated 3.9 years ago by 700 • written 3.9 years ago by • 0
0
votes
6
replies
2.7k
views
Problems installing BiocLite on Fedora 23, R 3.2.2
bioclite gcc install fedora
updated 8.8 years ago by 25k • written 8.8 years ago by ▴ 20
0
votes
1
reply
2.5k
views
Bioconductor installation problem
installation biocLite
updated 8.7 years ago by 25k • written 8.7 years ago by ▴ 10
0
votes
3
replies
1.4k
views
Prevent biocLite() from asking to update packages every time it's used
bioclite package installation package updates
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 40
2
votes
2
replies
8.2k
views
biocLite() fails to update packages when main library not writable
bioclite package updates
updated 9.5 years ago by ★ 8.2k • written 9.5 years ago by ★ 2.0k
2
votes
6
replies
1.6k
views
DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
bioclite bioconductor summarizeoverlaps genomicfeatures genomicalignments
updated 7.7 years ago by 42k • written 7.7 years ago by • 0
1
vote
2
replies
2.0k
views
Trouble Installing Bioconductor Basic Packages
R bioclite installation problem linuxmint virtualbox
updated 6.1 years ago by 67k • written 6.1 years ago by • 0
0
votes
1
reply
1.3k
views
Is there a way to revert from usedevel() mode in bioconductor
usedevel bioclite
updated 10.0 years ago by ★ 13k • written 10.0 years ago by • 0
1
vote
4
replies
1.2k
views
devel version: rtracklayer depends on GenomicRanges 1.19.3 but that's not available
rtracklayer genomicranges bioclite
updated 9.8 years ago by ★ 7.2k • written 9.8 years ago by ▴ 740
2
votes
2
replies
4.7k
views
Help with installing biocLite.R
biocLite biocinstaller
9.4 years ago thomas.mohr ▴ 20
4
votes
2
replies
3.9k
views
Cannot load or update GO.db
GO.db bioclite
9.3 years ago Steve Pederson ▴ 170
0
votes
5
replies
4.4k
views
FactoMineR failed after installing Bioconductor
software error factomineR bioclite
updated 9.3 years ago by 25k • written 9.3 years ago by • 0
0
votes
3
replies
1.6k
views
biocLite on R 3.2.0 stalls then vanishes
software error bioclite
updated 9.3 years ago by ★ 8.2k • written 9.3 years ago by • 0
0
votes
4
replies
2.2k
views
update packages when installing a new package
bioclite package updates
updated 9.3 years ago by ★ 8.2k • written 9.3 years ago by ▴ 680
1
vote
2
replies
1.6k
views
how to load edgeR each time I start R?
edger bioclite installation
updated 9.1 years ago by 67k • written 9.1 years ago by • 0
0
votes
4
replies
6.2k
views
Error in biocLite("BiocUpgrade") when trying to update to latest release
biocinstaller bioclite
updated 8.9 years ago by ★ 8.2k • written 8.9 years ago by ▴ 870
4
votes
4
replies
8.0k
views
Problems install R XML package on CentOS 7
r packages centos7 bioclite libxml2
updated 7.0 years ago by ▴ 120 • written 7.0 years ago by ▴ 10
6
votes
8
replies
8.1k
views
Problem installing BiocGenerics
software error BioGenerics bioclite
6.9 years ago p.janitza ▴ 50
0
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2
replies
1.5k
views
problem in installing bioClite
installation problem biocLite
updated 6.9 years ago by 25k • written 6.9 years ago by • 0
2
votes
5
replies
1.6k
views
Upgrade to 3.6 - can't seem to get past Bioconductor 3.5
bioconductor bioclite
updated 6.9 years ago by 4.0k • written 6.9 years ago by ▴ 10
0
votes
2
replies
3.0k
views
Problem using biocLite() to update packages
biocLite BiocInstaller variantannotation
updated 6.8 years ago by 67k • written 6.8 years ago by ★ 2.0k
0
votes
1
reply
1.5k
views
biocLite("lpsymphony") consistently fails with linker errors (can't find static libraries to link)
lpsymphony package installation bioclite
updated 6.7 years ago by ▴ 10 • written 6.8 years ago by • 0
0
votes
4
replies
1.5k
views
How could I upgrade 191 old packages in my directory?
bioclite
updated 6.8 years ago by 25k • written 6.8 years ago by • 0
1
vote
1
reply
3.8k
views
status was 'Couldn't connect to server': bioClite
bioclite
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
6
votes
2
replies
1.8k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite package installation installation install
updated 6.6 years ago by ★ 6.5k • written 6.6 years ago by ▴ 10
0
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2
replies
1.6k
views
Unable to install Bioconductor packages following R upgrade to 3.5.1
bioclite bioconductor
updated 6.1 years ago by 25k • written 6.1 years ago by • 0
1
vote
4
replies
2.1k
views
Problem installing Bioconductor
biocLite
updated 6.0 years ago by 25k • written 6.0 years ago by • 0
5
votes
5
replies
2.4k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite package installation withr biocinstaller rhtslib
updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 130
2
votes
2
replies
1.2k
views
biocLite doesn't work
bioconductor bioclite
updated 5.9 years ago by 4.0k • written 5.9 years ago by • 0
0
votes
1
reply
1.1k
views
I have installed bioconductor, R still asks me to install it
bioconductor biocLite GEOquery package
updated 4.6 years ago by ★ 13k • written 4.6 years ago by • 0
1
vote
2
replies
3.7k
views
BiocLite installation issues
BiocLite
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by ▴ 10
1
vote
1
reply
1.8k
views
Problem with installing "biocLite" and "Monocle" with R 4.2.0
biocLite
updated 2.3 years ago by ★ 6.5k • written 2.3 years ago by • 0
0
votes
1
reply
1.1k
views
Problem with installing "biocLite" using R4.2.0
biocLite
updated 2.3 years ago by ▴ 730 • written 2.3 years ago by • 0
0
votes
2
replies
1.3k
views
BiocInstaller_1.16.5.zip not found when using biocLite("BiocUpgrade")
bioclite biocupgrade
updated 8.3 years ago by 25k • written 8.3 years ago by • 0
0
votes
1
reply
1.4k
views
problem installing biocLite, MotifDb.
motifdb bioclite
updated 8.2 years ago by 16k • written 8.2 years ago by • 0
9
votes
6
replies
9.7k
views
What's the deal with biocLite's "Update all/some/none? [a/s/n]"?
bioclite
8.1 years ago kjo ▴ 70
3
votes
5
replies
1.9k
views
GO.db installation fails (MacOS, AnnotationDbi, R3.5.0)
GO bioclite R3.5 mac os x annotationdbi
updated 6.3 years ago by 25k • written 6.3 years ago by ▴ 30
2
votes
1
reply
4.7k
views
Upgrade to Bioconductor 3.4 - problems with R
r update upgrade bioclite
updated 7.8 years ago by 67k • written 7.8 years ago by • 0
0
votes
4
replies
4.9k
views
Problems with RSQLite compilation
rsqlite bioconductor bioclite rcpp.h
updated 7.7 years ago by 25k • written 7.7 years ago by • 0
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Comment: SingleR Label.Ont by Stepah • 0
[Aussie Play][1] cares about its Australian players by offering a safe and secure gaming experience where there is never a dull moment. The…
Comment: ensemblVEP deprecation and how to reproduce by Vincent J. Carey, Jr. 6.7k
What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…
Answer: Help with design matrix for RNA-seq data using edgeR by Gordon Smyth 51k
This forum is intended to help with software usage and syntax rather than to answer research questions, and your question is a definitely a…
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k
DESeq2 has a way of fixing the reference pseudo-sample used for normalization. In estimateSizeFactors man page, you will see an argument g…
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k
Sorry - I requested this to be posted here, I will answer.
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Answer: Help with design matrix for RNA-seq data using edgeR
Answer: Should tSNE from biol. replicates look alike?
Answer: Should tSNE from biol. replicates look alike?
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