Showing : bioclIte • reset
0
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4
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2.2k
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Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 5.1 years ago by ★ 1.3k • written 5.5 years ago by ▴ 70
5
votes
4
replies
5.1k
views
Problem using BiocUpgrade
update bioclite
updated 8.4 years ago by ★ 8.2k • written 8.4 years ago by • 0
0
votes
9
replies
2.9k
views
Upgrade bioconductor 3.2 to 3.3
bioclIte tximportData
updated 5.2 years ago by ▴ 80 • written 6.8 years ago by ▴ 40
0
votes
5
replies
1.6k
views
openCyto fails to load
opencyto bioclite
updated 7.4 years ago by • 0 • written 7.4 years ago by ▴ 20
0
votes
2
replies
1.3k
views
How to permanently add custom repositories to BiocLite
bioclite repository repos
5.5 years ago arnau.bria • 0
6
votes
2
replies
1.6k
views
BiocUpgrade without being promped to confirm
bioclite biocinstaller biocupgrade
updated 8.4 years ago by ★ 8.2k • written 8.4 years ago by ▴ 50
2
votes
6
replies
34k
views
Installing Bioclite.R Package
Bioclite install
7.3 years ago louiseapps2 • 0
6
votes
3
replies
10k
views
Why package "BiocLite" is not available (for R version 3.6.1)
biocLite
updated 3.4 years ago by 3.4k • written 3.4 years ago by • 0
1
vote
3
replies
1.2k
views
graphite functions missing, installed version is out of date
graphite bioclite
7.8 years ago mhlinder • 0
1
vote
3
replies
1.4k
views
update all/some/none how to set default to "update all"
biocLite update all default ask
updated 4.1 years ago by ▴ 30 • written 4.1 years ago by ▴ 10
0
votes
2
replies
1.3k
views
Issues installing packages miniconda environment
bioclite deseq2 miniconda packages
5.1 years ago cpat • 0
3
votes
2
replies
9.0k
views
biocLite R Version
biocLite
updated 2.5 years ago by 640 • written 2.5 years ago by • 0
0
votes
6
replies
2.2k
views
Problems installing BiocLite on Fedora 23, R 3.2.2
bioclite gcc install fedora
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 20
0
votes
1
reply
2.1k
views
Bioconductor installation problem
installation biocLite
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 10
0
votes
3
replies
1.1k
views
Prevent biocLite() from asking to update packages every time it's used
bioclite package installation package updates
updated 6.9 years ago by 25k • written 6.9 years ago by ▴ 40
2
votes
2
replies
7.9k
views
biocLite() fails to update packages when main library not writable
bioclite package updates
updated 8.0 years ago by ★ 8.2k • written 8.1 years ago by ★ 2.0k
2
votes
6
replies
1.1k
views
DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
bioclite bioconductor summarizeoverlaps genomicfeatures genomicalignments
updated 6.3 years ago by 39k • written 6.3 years ago by • 0
1
vote
2
replies
1.3k
views
Trouble Installing Bioconductor Basic Packages
R bioclite installation problem linuxmint virtualbox
updated 4.6 years ago by 62k • written 4.6 years ago by • 0
0
votes
1
reply
921
views
Is there a way to revert from usedevel() mode in bioconductor
usedevel bioclite
updated 8.5 years ago by 13k • written 8.5 years ago by • 0
1
vote
4
replies
846
views
devel version: rtracklayer depends on GenomicRanges 1.19.3 but that's not available
rtracklayer genomicranges bioclite
updated 8.4 years ago by ★ 7.2k • written 8.4 years ago by ▴ 740
2
votes
2
replies
4.2k
views
Help with installing biocLite.R
biocLite biocinstaller
7.9 years ago thomas.mohr ▴ 20
4
votes
2
replies
3.5k
views
Cannot load or update GO.db
GO.db bioclite
7.9 years ago Steve Pederson ▴ 170
0
votes
5
replies
3.6k
views
FactoMineR failed after installing Bioconductor
software error factomineR bioclite
updated 7.9 years ago by 25k • written 7.9 years ago by • 0
0
votes
3
replies
1.2k
views
biocLite on R 3.2.0 stalls then vanishes
software error bioclite
updated 7.9 years ago by ★ 8.2k • written 7.9 years ago by • 0
0
votes
4
replies
1.6k
views
update packages when installing a new package
bioclite package updates
updated 7.8 years ago by ★ 8.2k • written 7.8 years ago by ▴ 680
1
vote
2
replies
1.3k
views
how to load edgeR each time I start R?
edger bioclite installation
updated 7.7 years ago by 62k • written 7.7 years ago by • 0
0
votes
4
replies
5.7k
views
Error in biocLite("BiocUpgrade") when trying to update to latest release
biocinstaller bioclite
updated 7.5 years ago by ★ 8.2k • written 7.5 years ago by ▴ 840
4
votes
4
replies
6.3k
views
Problems install R XML package on CentOS 7
r packages centos7 bioclite libxml2
updated 5.6 years ago by ▴ 120 • written 5.6 years ago by ▴ 10
6
votes
8
replies
7.0k
views
Problem installing BiocGenerics
software error BioGenerics bioclite
5.4 years ago p.janitza ▴ 50
0
votes
2
replies
1.1k
views
problem in installing bioClite
installation problem biocLite
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
2
votes
5
replies
1.1k
views
Upgrade to 3.6 - can't seem to get past Bioconductor 3.5
bioconductor bioclite
updated 5.4 years ago by 3.4k • written 5.4 years ago by ▴ 10
0
votes
2
replies
2.4k
views
Problem using biocLite() to update packages
biocLite BiocInstaller variantannotation
updated 5.4 years ago by 62k • written 5.4 years ago by ★ 2.0k
0
votes
1
reply
1.1k
views
biocLite("lpsymphony") consistently fails with linker errors (can't find static libraries to link)
lpsymphony package installation bioclite
updated 5.3 years ago by ▴ 10 • written 5.3 years ago by • 0
0
votes
4
replies
1.0k
views
How could I upgrade 191 old packages in my directory?
bioclite
updated 5.3 years ago by 25k • written 5.3 years ago by • 0
1
vote
1
reply
3.0k
views
status was 'Couldn't connect to server': bioClite
bioclite
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
6
votes
2
replies
1.3k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite package installation installation install
updated 5.1 years ago by ★ 6.0k • written 5.1 years ago by ▴ 10
0
votes
2
replies
1.1k
views
Unable to install Bioconductor packages following R upgrade to 3.5.1
bioclite bioconductor
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
1
vote
4
replies
1.4k
views
Problem installing Bioconductor
biocLite
updated 4.6 years ago by 25k • written 4.6 years ago by • 0
5
votes
5
replies
1.6k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite package installation withr biocinstaller rhtslib
updated 4.6 years ago by 25k • written 4.6 years ago by ▴ 60
2
votes
2
replies
791
views
biocLite doesn't work
bioconductor bioclite
updated 4.5 years ago by 3.4k • written 4.5 years ago by • 0
0
votes
1
reply
616
views
I have installed bioconductor, R still asks me to install it
bioconductor biocLite GEOquery package
updated 3.2 years ago by 13k • written 3.2 years ago by • 0
1
vote
2
replies
2.8k
views
BiocLite installation issues
BiocLite
updated 2.6 years ago by 3.8k • written 2.6 years ago by ▴ 10
1
vote
1
reply
961
views
Problem with installing "biocLite" and "Monocle" with R 4.2.0
biocLite
updated 10 months ago by ★ 6.0k • written 10 months ago by • 0
0
votes
1
reply
519
views
Problem with installing "biocLite" using R4.2.0
biocLite
updated 10 months ago by ▴ 710 • written 10 months ago by • 0
0
votes
2
replies
956
views
BiocInstaller_1.16.5.zip not found when using biocLite("BiocUpgrade")
bioclite biocupgrade
updated 6.9 years ago by 25k • written 6.9 years ago by • 0
0
votes
1
reply
1.0k
views
problem installing biocLite, MotifDb.
motifdb bioclite
updated 6.8 years ago by 16k • written 6.8 years ago by • 0
8
votes
6
replies
8.5k
views
What's the deal with biocLite's "Update all/some/none? [a/s/n]"?
bioclite
6.7 years ago kjo ▴ 60
3
votes
5
replies
1.2k
views
GO.db installation fails (MacOS, AnnotationDbi, R3.5.0)
GO bioclite R3.5 mac os x annotationdbi
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 30
2
votes
1
reply
4.4k
views
Upgrade to Bioconductor 3.4 - problems with R
r update upgrade bioclite
updated 6.3 years ago by 62k • written 6.3 years ago by • 0
0
votes
4
replies
4.2k
views
Problems with RSQLite compilation
rsqlite bioconductor bioclite rcpp.h
updated 6.2 years ago by 25k • written 6.2 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: how can I do gene differential analysis on data after vst by Gordon Smyth 47k
I advised you to use limma-trend, which you can look up in the limma User's Guide. You simply analyse the vst values as if they were from a…
Comment: how can I do gene differential analysis on data after vst by linouhao ▴ 20
I'm so happy and surprised to get your professional reply. library(limma) library(edge) counts <- read.csv("raw_counts.cs…
Comment: can negative value microarray matrix data analysed by limma directly by Gordon Smyth 47k
The discussion on research gate is not of much value.
Answer: can negative value microarray matrix data analysed by limma directly by Gordon Smyth 47k
limma is routinely used for all the preprocessing methods that you mentioned, and some of them are covered in the limma User's Guide. Not …
Answer: how can I do gene differential analysis on data after vst by Gordon Smyth 47k
Differential expression analysis of vst values can be performed by limma-trend.
Votes
Answer: Failed to install Biobase
Answer: Latest version of ggtree (3.6.2) unavailable on Anaconda. Only 3.6.0 exists.
BiocGenerics package: 404 error during R shiny app deployment
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: HISAT2 mapping
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