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Showing :
bioclIte
•
reset
9
votes
6
replies
10k
views
What's the deal with biocLite's "Update all/some/none? [a/s/n]"?
bioclite
8.6 years ago
kjo
▴ 70
8
votes
4
replies
7.3k
views
Can't upgrade to Bioconductor 3.3?
bioconductor
biocupgrade
upgrade
update
bioclite
8.8 years ago
enricoferrero
▴ 680
6
votes
8
replies
8.4k
views
Problem installing BiocGenerics
software error
BioGenerics
bioclite
7.3 years ago
p.janitza
▴ 50
6
votes
2
replies
2.0k
views
BiocUpgrade without being promped to confirm
bioclite
biocinstaller
biocupgrade
updated 10.3 years ago by
Dan Tenenbaum
★ 8.2k • written 10.3 years ago by
Simon Coetzee
▴ 50
6
votes
2
replies
1.9k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite
package installation
installation
install
updated 7.0 years ago by
Mike Smith
★ 6.6k • written 7.0 years ago by
cristian
▴ 10
6
votes
3
replies
13k
views
Why package "BiocLite" is not available (for R version 3.6.1)
biocLite
updated 5.2 years ago by
shepherl
4.1k • written 5.2 years ago by
3076782769
• 0
5
votes
4
replies
5.7k
views
Problem using BiocUpgrade
update
bioclite
updated 10.3 years ago by
Dan Tenenbaum
★ 8.2k • written 10.3 years ago by
dianmante
• 0
5
votes
11
replies
3.1k
views
Error while installing Phyloseq using biocLite
bioclite
phyloseq
install error
6.3 years ago
khp
▴ 30
5
votes
5
replies
2.6k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite
package installation
withr
biocinstaller
rhtslib
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
merv
▴ 150
4
votes
4
replies
8.4k
views
Problems install R XML package on CentOS 7
r packages
centos7
bioclite
libxml2
updated 7.4 years ago by
Pariksheet Nanda
▴ 120 • written 7.4 years ago by
kai.karius
▴ 10
4
votes
2
replies
4.0k
views
Cannot load or update GO.db
GO.db
bioclite
9.8 years ago
Steve Pederson
▴ 170
3
votes
5
replies
2.1k
views
GO.db installation fails (MacOS, AnnotationDbi, R3.5.0)
GO
bioclite
R3.5
mac os x
annotationdbi
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
Jens Preussner
▴ 30
3
votes
2
replies
22k
views
biocLite R Version
biocLite
updated 4.3 years ago by
Marcel Ramos
700 • written 4.3 years ago by
jmagomez
• 0
2
votes
2
replies
8.3k
views
biocLite() fails to update packages when main library not writable
bioclite
package updates
updated 9.9 years ago by
Dan Tenenbaum
★ 8.2k • written 9.9 years ago by
Jenny Drnevich
★ 2.0k
2
votes
10
replies
6.4k
views
Install older specific version from an R package that is on the Bioconductor Repository
Bioconductor
biocLite
R packages
oldversion
9.2 years ago
svlachavas
▴ 840
2
votes
2
replies
4.8k
views
Help with installing biocLite.R
biocLite
biocinstaller
9.8 years ago
thomas.mohr
▴ 20
2
votes
6
replies
37k
views
Installing Bioclite.R Package
Bioclite
install
9.2 years ago
louiseapps2
• 0
2
votes
6
replies
1.7k
views
DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
bioclite
bioconductor
summarizeoverlaps
genomicfeatures
genomicalignments
updated 8.2 years ago by
Michael Love
43k • written 8.2 years ago by
BioinfStudent
• 0
2
votes
1
reply
1.5k
views
problems in biocLite
biocLite
installation
updated 10.3 years ago by
Martin Morgan
25k • written 10.3 years ago by
sara.m79
• 0
2
votes
5
replies
1.7k
views
Upgrade to 3.6 - can't seem to get past Bioconductor 3.5
bioconductor
bioclite
updated 7.3 years ago by
shepherl
4.1k • written 7.3 years ago by
barb.bryant
▴ 10
2
votes
1
reply
4.8k
views
Upgrade to Bioconductor 3.4 - problems with R
r update
upgrade
bioclite
updated 8.2 years ago by
James W. MacDonald
68k • written 8.2 years ago by
Lna
• 0
2
votes
2
replies
1.3k
views
biocLite doesn't work
bioconductor
bioclite
updated 6.4 years ago by
shepherl
4.1k • written 6.4 years ago by
zkamali1373
• 0
1
vote
3
replies
1.7k
views
Error biocLite() newest version of ChAMP
R
bioclite
champ
6.8 years ago
rosa_hegi
▴ 10
1
vote
4
replies
1.3k
views
devel version: rtracklayer depends on GenomicRanges 1.19.3 but that's not available
rtracklayer
genomicranges
bioclite
updated 10.3 years ago by
Marc Carlson
★ 7.2k • written 10.3 years ago by
Janet Young
▴ 740
1
vote
4
replies
2.4k
views
Problem installing Bioconductor
biocLite
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
rj.innet
• 0
1
vote
2
replies
1.7k
views
how to load edgeR each time I start R?
edger
bioclite
installation
updated 9.6 years ago by
James W. MacDonald
68k • written 9.6 years ago by
lplough
• 0
1
vote
2
replies
2.1k
views
Trouble Installing Bioconductor Basic Packages
R
bioclite
installation problem
linuxmint
virtualbox
updated 6.5 years ago by
James W. MacDonald
68k • written 6.5 years ago by
tasnif.rahman
• 0
1
vote
3
replies
1.7k
views
graphite functions missing, installed version is out of date
graphite
bioclite
9.7 years ago
mhlinder
• 0
1
vote
3
replies
2.5k
views
update all/some/none how to set default to "update all"
biocLite
update
all
default
ask
updated 6.0 years ago by
Fischer-philipp
▴ 30 • written 6.0 years ago by
rgiannico
▴ 10
1
vote
2
replies
1.1k
views
bioclite behaviour with defunct packages
bioclite
9.2 years ago
David.Duffy
▴ 10
1
vote
2
replies
3.9k
views
dyld: Library not loaded: @rpath/libc++abi.1.dylib
DESeq2
biocLite
updated 6.8 years ago by
Mike Smith
★ 6.6k • written 6.8 years ago by
jordan.berg
• 0
1
vote
2
replies
4.1k
views
BiocLite installation issues
BiocLite
updated 4.4 years ago by
Kevin Blighe
★ 4.0k • written 4.4 years ago by
patricia_slattery
▴ 10
1
vote
2
replies
1.7k
views
error in sourcing biocLite: Error in get(".BioC_version_associated_with_R_version", envir = asNamespace("tools")
bioclite
9.8 years ago
melanie.shook
• 0
1
vote
1
reply
4.1k
views
status was 'Couldn't connect to server': bioClite
bioclite
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
GENOMIC_region
• 0
1
vote
1
reply
2.0k
views
Problem with installing "biocLite" and "Monocle" with R 4.2.0
biocLite
updated 2.8 years ago by
Mike Smith
★ 6.6k • written 2.8 years ago by
a_d_ho
• 0
0
votes
2
replies
1.7k
views
Unable to install Bioconductor packages following R upgrade to 3.5.1
bioclite
bioconductor
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
AR3513
• 0
0
votes
1
reply
1.3k
views
I have installed bioconductor, R still asks me to install it
bioconductor
biocLite
GEOquery
package
updated 5.1 years ago by
Steve Lianoglou
★ 13k • written 5.1 years ago by
luhan.ni
• 0
0
votes
1
reply
1.2k
views
Problem with installing "biocLite" using R4.2.0
biocLite
updated 2.8 years ago by
Lluís Revilla Sancho
▴ 760 • written 2.8 years ago by
a_d_ho
• 0
0
votes
1
reply
1.4k
views
Is there a way to revert from usedevel() mode in bioconductor
usedevel
bioclite
updated 10.4 years ago by
Steve Lianoglou
★ 13k • written 10.4 years ago by
skm770
• 0
0
votes
1
reply
2.1k
views
Warning messages with biocLite()
bioclite
10.2 years ago
Robert Baer
▴ 70
0
votes
5
replies
4.6k
views
FactoMineR failed after installing Bioconductor
software error
factomineR
bioclite
updated 9.7 years ago by
Martin Morgan
25k • written 9.7 years ago by
dany_wm44
• 0
0
votes
3
replies
1.7k
views
biocLite on R 3.2.0 stalls then vanishes
software error
bioclite
updated 9.7 years ago by
Dan Tenenbaum
★ 8.2k • written 9.7 years ago by
Will Landau
• 0
0
votes
4
replies
2.4k
views
update packages when installing a new package
bioclite
package updates
updated 9.7 years ago by
Dan Tenenbaum
★ 8.2k • written 9.7 years ago by
carol white
▴ 680
0
votes
1
reply
2.0k
views
Questions regarding removal and following re-installation of a specific R package using a custom library path
package installation
custom library path
biocLite
bioconductor
9.4 years ago
svlachavas
▴ 840
0
votes
4
replies
6.3k
views
Error in biocLite("BiocUpgrade") when trying to update to latest release
biocinstaller
bioclite
updated 9.3 years ago by
Dan Tenenbaum
★ 8.2k • written 9.3 years ago by
Stephanie M. Gogarten
▴ 890
0
votes
5
replies
2.3k
views
openCyto fails to load
opencyto
bioclite
updated 9.3 years ago by
yang.chen
• 0 • written 9.3 years ago by
pavitrarc
▴ 20
0
votes
4
replies
3.5k
views
Impossible to use goseq package - problem with geneLenDataBase
goseq
geneLenDataBase
bioclite
rstudio
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
amyfm
▴ 10
0
votes
6
replies
2.9k
views
Problems installing BiocLite on Fedora 23, R 3.2.2
bioclite
gcc
install
fedora
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
Knut Hansen
▴ 20
0
votes
1
reply
2.6k
views
Bioconductor installation problem
installation
biocLite
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
liangc.mu
▴ 10
0
votes
3
replies
1.5k
views
Prevent biocLite() from asking to update packages every time it's used
bioclite
package installation
package updates
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
jacorvar
▴ 40
50 results • Page
1 of 1
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Comment: WGCNA coupled with differential expression analysis: question about baseline mod
by
hetaf16210
• 0
@[slope][1] If feasible, consider conducting both analyses. Start with a pooled analysis to identify broad patterns, then conduct separate …
Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
980linnet
• 0
Stuck on DESeq2 with alpha=.05 for padj cutoff. Can't seem to get the differential expression analysis to stick the landing - it's like try…
Comment: internal error in trio library when trying to use lfmm() in LEA package
by
PW
• 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
Guilherme
• 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp
by
Ian D.
▴ 70
Please can you comment on this @rory.
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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