Showing : bioclIte • reset
2
votes
6
replies
36k
views
Installing Bioclite.R Package
Bioclite install
8.4 years ago louiseapps2 • 0
3
votes
2
replies
16k
views
biocLite R Version
biocLite
updated 3.5 years ago by 690 • written 3.5 years ago by • 0
6
votes
3
replies
12k
views
Why package "BiocLite" is not available (for R version 3.6.1)
biocLite
updated 4.4 years ago by 3.8k • written 4.4 years ago by • 0
9
votes
6
replies
9.4k
views
What's the deal with biocLite's "Update all/some/none? [a/s/n]"?
bioclite
7.7 years ago kjo ▴ 70
2
votes
2
replies
8.1k
views
biocLite() fails to update packages when main library not writable
bioclite package updates
updated 9.1 years ago by ★ 8.2k • written 9.1 years ago by ★ 2.0k
6
votes
8
replies
7.8k
views
Problem installing BiocGenerics
software error BioGenerics bioclite
6.5 years ago p.janitza ▴ 50
4
votes
4
replies
7.6k
views
Problems install R XML package on CentOS 7
r packages centos7 bioclite libxml2
updated 6.6 years ago by ▴ 120 • written 6.6 years ago by ▴ 10
8
votes
4
replies
6.9k
views
Can't upgrade to Bioconductor 3.3?
bioconductor biocupgrade upgrade update bioclite
7.9 years ago enricoferrero ▴ 660
0
votes
2
replies
6.1k
views
Unable to install any bioconductor packages
R biocinstaller bioclite package installation
6.7 years ago sebastien200109 • 0
0
votes
4
replies
6.0k
views
Error in biocLite("BiocUpgrade") when trying to update to latest release
biocinstaller bioclite
updated 8.5 years ago by ★ 8.2k • written 8.5 years ago by ▴ 870
2
votes
10
replies
6.0k
views
Install older specific version from an R package that is on the Bioconductor Repository
Bioconductor biocLite R packages oldversion
8.4 years ago svlachavas ▴ 830
5
votes
4
replies
5.5k
views
Problem using BiocUpgrade
update bioclite
updated 9.5 years ago by ★ 8.2k • written 9.5 years ago by • 0
0
votes
4
replies
4.7k
views
Problems with RSQLite compilation
rsqlite bioconductor bioclite rcpp.h
updated 7.3 years ago by 25k • written 7.3 years ago by • 0
2
votes
1
reply
4.6k
views
Upgrade to Bioconductor 3.4 - problems with R
r update upgrade bioclite
updated 7.4 years ago by 65k • written 7.4 years ago by • 0
2
votes
2
replies
4.5k
views
Help with installing biocLite.R
biocLite biocinstaller
9.0 years ago thomas.mohr ▴ 20
0
votes
5
replies
4.1k
views
FactoMineR failed after installing Bioconductor
software error factomineR bioclite
updated 8.9 years ago by 25k • written 8.9 years ago by • 0
4
votes
2
replies
3.8k
views
Cannot load or update GO.db
GO.db bioclite
9.0 years ago Steve Pederson ▴ 170
1
vote
1
reply
3.6k
views
status was 'Couldn't connect to server': bioClite
bioclite
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
1
vote
2
replies
3.5k
views
dyld: Library not loaded: @rpath/libc++abi.1.dylib
DESeq2 biocLite
updated 6.0 years ago by ★ 6.5k • written 6.0 years ago by • 0
0
votes
9
replies
3.5k
views
Upgrade bioconductor 3.2 to 3.3
bioclIte tximportData
updated 6.2 years ago by ▴ 80 • written 7.8 years ago by ▴ 40
1
vote
2
replies
3.4k
views
BiocLite installation issues
BiocLite
updated 3.6 years ago by ★ 3.9k • written 3.6 years ago by ▴ 10
0
votes
4
replies
3.1k
views
Impossible to use goseq package - problem with geneLenDataBase
goseq geneLenDataBase bioclite rstudio
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 10
0
votes
2
replies
2.8k
views
Problem using biocLite() to update packages
biocLite BiocInstaller variantannotation
updated 6.4 years ago by 65k • written 6.4 years ago by ★ 2.0k
5
votes
11
replies
2.7k
views
Error while installing Phyloseq using biocLite
bioclite phyloseq install error
5.5 years ago khp ▴ 30
0
votes
4
replies
2.7k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 6.2 years ago by ★ 1.3k • written 6.6 years ago by ▴ 70
0
votes
5
replies
2.6k
views
reactome.db installation problem
reactome.db bioclite
6.9 years ago Jan-Jaap • 0
0
votes
6
replies
2.6k
views
Problems installing BiocLite on Fedora 23, R 3.2.2
bioclite gcc install fedora
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 20
0
votes
1
reply
2.4k
views
Bioconductor installation problem
installation biocLite
updated 8.3 years ago by 25k • written 8.3 years ago by ▴ 10
5
votes
5
replies
2.2k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite package installation withr biocinstaller rhtslib
updated 5.6 years ago by 25k • written 5.6 years ago by ▴ 120
0
votes
4
replies
2.1k
views
Bioconductor - not updating
bioconductor R bioclite
updated 7.0 years ago by 25k • written 7.0 years ago by • 0
0
votes
4
replies
2.0k
views
update packages when installing a new package
bioclite package updates
updated 8.9 years ago by ★ 8.2k • written 8.9 years ago by ▴ 680
1
vote
3
replies
2.0k
views
update all/some/none how to set default to "update all"
biocLite update all default ask
updated 5.2 years ago by ▴ 30 • written 5.2 years ago by ▴ 10
0
votes
5
replies
2.0k
views
openCyto fails to load
opencyto bioclite
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 20
0
votes
1
reply
1.9k
views
Warning messages with biocLite()
bioclite
9.4 years ago Robert Baer ▴ 70
0
votes
2
replies
1.9k
views
Issues installing packages miniconda environment
bioclite deseq2 miniconda packages
6.1 years ago cpat • 0
1
vote
4
replies
1.8k
views
Problem installing Bioconductor
biocLite
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
6
votes
2
replies
1.8k
views
BiocUpgrade without being promped to confirm
bioclite biocinstaller biocupgrade
updated 9.4 years ago by ★ 8.2k • written 9.4 years ago by ▴ 50
1
vote
2
replies
1.8k
views
Trouble Installing Bioconductor Basic Packages
R bioclite installation problem linuxmint virtualbox
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
0
votes
1
reply
1.8k
views
Questions regarding removal and following re-installation of a specific R package using a custom library path
package installation custom library path biocLite bioconductor
8.6 years ago svlachavas ▴ 830
0
votes
2
replies
1.7k
views
How to permanently add custom repositories to BiocLite
bioclite repository repos
6.6 years ago arnau.bria • 0
6
votes
2
replies
1.7k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite package installation installation install
updated 6.2 years ago by ★ 6.5k • written 6.2 years ago by ▴ 10
3
votes
5
replies
1.7k
views
GO.db installation fails (MacOS, AnnotationDbi, R3.5.0)
GO bioclite R3.5 mac os x annotationdbi
updated 5.9 years ago by 25k • written 5.9 years ago by ▴ 30
0
votes
3
replies
1.7k
views
unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 6.8 years ago by 65k • written 6.8 years ago by • 0
1
vote
1
reply
1.6k
views
Problem with installing "biocLite" and "Monocle" with R 4.2.0
biocLite
updated 23 months ago by ★ 6.5k • written 23 months ago by • 0
1
vote
2
replies
1.5k
views
how to load edgeR each time I start R?
edger bioclite installation
updated 8.7 years ago by 65k • written 8.7 years ago by • 0
1
vote
3
replies
1.5k
views
Error biocLite() newest version of ChAMP
R bioclite champ
6.0 years ago rosa_hegi ▴ 10
1
vote
2
replies
1.5k
views
error in sourcing biocLite: Error in get(".BioC_version_associated_with_R_version", envir = asNamespace("tools")
bioclite
9.0 years ago melanie.shook • 0
0
votes
4
replies
1.5k
views
biocLITE annotation Rstudio
annotation bioclite
updated 6.7 years ago by 65k • written 6.7 years ago by • 0
2
votes
5
replies
1.5k
views
Upgrade to 3.6 - can't seem to get past Bioconductor 3.5
bioconductor bioclite
updated 6.5 years ago by 3.8k • written 6.5 years ago by ▴ 10
0
votes
3
replies
1.5k
views
biocLite on R 3.2.0 stalls then vanishes
software error bioclite
updated 8.9 years ago by ★ 8.2k • written 8.9 years ago by • 0
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Comment: Estimating Cell Counts for EPIC V2 array data by normawiedman059 • 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Comment: Finding DEGs by using edgeR by Gordon Smyth 50k
Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …
Comment: How to make DGEList and design matrix by edgeR package by prity6459 • 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR by prity6459 • 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size by Gordon Smyth 50k
It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…
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A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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