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News:
List of Deprecated Packages for Bioc3.18
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Devel
9 months ago • updated 1 day ago
shepherl
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bioconductor emailing list
Bioconductor
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shepherl
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Bioconductor
Bioc204
27 days ago
shepherl
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News:
Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
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Bioconductor
27 days ago
Maria Doyle
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Internet connection for Bioconductor packages in Rstudio in Iran...
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GEOquery
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19 days ago • updated 16 days ago
needNGS
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News:
Important Release 3.18 Freeze Announcment
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Bioconductor
Bioconducto
6 days ago
shepherl
3.8k
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Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
Make an MAplot. There is almost certainly an issue with normalization here given the very biased distribution of logFCs as in this Volcano.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
gabriel.hoffman
▴ 100
See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…
Comment: A ComBat-seq issue: the covariates are confounded
by
W. Evan Johnson
▴ 850
This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…
Answer: Different number of exons in reference genome affects DEXSeq analysis
by
Alejandro Reyes
★ 1.9k
Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…
Answer: Adding columns to DEXSeqResults object
by
Alejandro Reyes
★ 1.9k
I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…
Votes
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
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