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bioconductor
•
reset
3
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18
replies
2.8k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
9 months ago • updated 13 hours ago
shepherl
3.8k
0
votes
0
replies
58
views
News:
Important Release 3.18 Freeze Announcment
Release
release
Bioconductor
Bioconducto
5 days ago
shepherl
3.8k
0
votes
7
replies
310
views
Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages
Proxy
Bioconductor
GEOquery
Internet_connection_problem
18 days ago • updated 15 days ago
needNGS
• 0
0
votes
2
replies
150
views
bioconductor emailing list
Bioconductor
updated 23 days ago by
shepherl
3.8k • written 23 days ago by
1427972815
• 0
0
votes
0
replies
112
views
News:
Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024
Conference
Bioconductor
26 days ago
Maria Doyle
▴ 70
0
votes
0
replies
102
views
News:
Nominations for Bioconductor Awards 2024!
Recognition
Awards
Bioconductor
Bioc204
26 days ago
shepherl
3.8k
0
votes
5
replies
9.2k
views
tximport all(file.exists(files)) is not TRUE
bioconductor
tximport
rnaseq
R
updated 29 days ago by
Eva
• 0 • written 7.6 years ago by
ctl
• 0
0
votes
1
reply
274
views
News:
BioC2024 abstract submission is open!
BioC2024
Conference
Bioconductor
updated 4 weeks ago by
howell
• 0 • written 8 weeks ago by
Maria Doyle
▴ 70
1
vote
2
replies
229
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq
Bioconductor
rtracklayer
5 weeks ago
thomas
• 0
1
vote
0
replies
240
views
News:
Nominations for Bioconductor Awards 2024!
Recognition
Awards
Bioconductor
Bioc2024
8 weeks ago • updated 6 weeks ago
shepherl
3.8k
0
votes
0
replies
147
views
News:
BioC2024 registration is now open!
BioC2024
Conference
Bioconductor
Community
6 weeks ago
Maria Doyle
▴ 70
2
votes
5
replies
1.3k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR
RNASeq
RNASeqData
Bioconductor
written 13 months ago by
Rebekah
• 0
6
votes
11
replies
889
views
Packages don't update, but no error or warning is thrown
Bioconductor
11 weeks ago • updated 8 weeks ago
gernophil
• 0
0
votes
0
replies
146
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
9 weeks ago
Maria Doyle
▴ 70
2
votes
0
replies
209
views
News:
Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
9 weeks ago
Maria Doyle
▴ 70
1
vote
4
replies
393
views
Can't post a question containing code?
Bioconductor
updated 9 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 9 weeks ago by
DS
▴ 10
2
votes
4
replies
3.7k
views
How to convert large gene counts data into matrix?
R
Bioconductor
singlecell
bioinformatics
seurat
updated 9 weeks ago by
Gordon Smyth
50k • written 4.7 years ago by
sambunga094
• 0
0
votes
1
reply
201
views
Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 9 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 9 weeks ago by
vanbelj
▴ 30
2
votes
11
replies
890
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 10 weeks ago by
Guido Hooiveld
★ 3.9k • written 6 months ago by
cinzia.spagnoli
• 0
0
votes
1
reply
184
views
Limitation on single file size and package size when developing Bioc package
packagedevelopment
datalimit
Bioconductor
updated 10 weeks ago by
Hervé Pagès
16k • written 10 weeks ago by
Xin Wang
• 0
3
votes
1
reply
279
views
News:
Bioconductor.org has a new look!
Bioconductor
Website
written 3 months ago by
shepherl
3.8k
2
votes
1
reply
260
views
News:
"Edit" button not working
Bioconductor
Website
SupportSite
updated 10 weeks ago by
Lori
• 0 • written 3 months ago by
shepherl
3.8k
0
votes
0
replies
183
views
News:
Note about packages submitted for Bioconductor 3.19
Release
Submission
release
Bioconductor
11 weeks ago
shepherl
3.8k
0
votes
21
replies
2.4k
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
written 3.1 years ago by
lea
• 0
2
votes
2
replies
288
views
How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by
Hervé Pagès
16k • written 3 months ago by
Marek Gierlinski
▴ 30
0
votes
4
replies
658
views
Bioconductor installation
Bioconductor
written 3 months ago by
Akhil
• 0
4
votes
3
replies
313
views
Bioconductor code browser time out
Bioconductor
updated 3 months ago by
Mike Smith
★ 6.5k • written 3 months ago by
Marek Gierlinski
▴ 30
0
votes
0
replies
242
views
News:
Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometryData
FlowCytometry
3 months ago
info
▴ 10
5
votes
18
replies
7.4k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor
Install
DESeq2
updated 3 months ago by
picasa1983
• 0 • written 2.2 years ago by
Victor
• 0
0
votes
2
replies
1.3k
views
Conducting pair-wise comparison in DESeq2?
DESeq2
deseq2
biocondu
Bioconductor
RNASeq
written 14 months ago by
Hussain
• 0
0
votes
3
replies
1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.1 years ago by
tanya
• 0
1
vote
5
replies
2.1k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.2 years ago by
chandlerjd58
▴ 10
5
votes
1
reply
412
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 5 months ago by
shepherl
3.8k
0
votes
0
replies
218
views
Normalising processed Proteomics data in R
Bioconductor
Proteomics
4 months ago
Joshua
• 0
0
votes
8
replies
8.5k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 4 months ago by
Marcel Ramos
690 • written 2.7 years ago by
charlotte
▴ 10
0
votes
6
replies
2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 5 months ago by
ATpoint
★ 4.0k • written 16 months ago by
laujihen
• 0
1
vote
1
reply
1.0k
views
News:
Nominations for Bioconductor 2022 Awards!
Bioc2022
Awards
Bioconductor
Recognition
written 2.1 years ago by
shepherl
3.8k
2
votes
0
replies
466
views
News:
Bioconductor's Transition Away from Twitter/X
Bioconductor
5 months ago
Maria Doyle
▴ 70
0
votes
0
replies
265
views
News:
CRAN downtime
BiocManager
Bioconductor
5 months ago
shepherl
3.8k
2
votes
4
replies
573
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor
PackageType
BiocStyle
updated 5 months ago by
shepherl
3.8k • written 5 months ago by
lavanilla44
• 0
0
votes
3
replies
516
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor
BiocPkgTools
5 months ago
blessybo
• 0
0
votes
2
replies
1.0k
views
Bioconductor version cannot be validated
Bioconductor
updated 5 months ago by
Manuel
• 0 • written 7 months ago by
xlu.cpu
• 0
0
votes
1
reply
734
views
Job:
Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor
artificialintelligence
JobPosting
machinelearning
7 months ago • updated 5 months ago
Gordon Smyth
50k
0
votes
1
reply
324
views
Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 5 months ago by
shepherl
3.8k • written 5 months ago by
Marek Gierlinski
▴ 30
2
votes
3
replies
1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor
merge data frames
combine
biocgenerics
8.4 years ago • updated 5 months ago
Konstantinos Yeles
▴ 80
4
votes
10
replies
1.7k
views
Archives prior to 3.15 gone
archive
bioconductor
updated 5 months ago by
shepherl
3.8k • written 19 months ago by
Florian Finkernagel
▴ 30
0
votes
0
replies
342
views
News:
COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor
PackageTypeData
PackageType
6 months ago
info
▴ 10
2
votes
1
reply
821
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor
biocon
limma
updated 6 months ago by
Gordon Smyth
50k • written 6 months ago by
ningyuan
• 0
5
votes
2
replies
690
views
ComBat_seq function in sva package does not return a matrix
sva
ComBat
ComBat-seq
Bioconductor
ComBat_seq
6 months ago
Federico
▴ 10
0
votes
2
replies
600
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor
clusterProfiler
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
nilanjanamani88
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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