Showing : bioconductor • reset
1
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13
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unable to access index for repository
Bioconductor ConsensusClusterPlus
updated 8 months ago by • 0 • written 16 months ago by • 0
0
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5
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9.2k
views
tximport all(file.exists(files)) is not TRUE
bioconductor tximport rnaseq R
updated 5 weeks ago by • 0 • written 7.6 years ago by • 0
0
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8
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8.5k
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Bioconductor version cannot be validated
BiocManager Bioconductor
updated 5 months ago by 690 • written 2.7 years ago by ▴ 10
5
votes
18
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7.4k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 4 months ago by • 0 • written 2.2 years ago by • 0
2
votes
4
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3.8k
views
How to convert large gene counts data into matrix?
R Bioconductor singlecell bioinformatics seurat
updated 10 weeks ago by 50k • written 4.8 years ago by • 0
0
votes
1
reply
3.4k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 7 months ago by 65k • written 7 months ago by • 0
3
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18
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2.9k
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News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
10 months ago • updated 7 days ago shepherl 3.8k
0
votes
18
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2.4k
views
problem installing ENmix package
ENmix Bioconductor rtracklayer
written 3.1 years ago by • 0
0
votes
2
replies
2.3k
views
vmatchPattern on DNAstring set
Bioconductor
9 months ago Avner • 0
1
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5
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2.1k
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pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.2 years ago by ▴ 10
0
votes
6
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2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.0k • written 16 months ago by • 0
4
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10
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1.7k
views
Archives prior to 3.15 gone
archive bioconductor
updated 6 months ago by 3.8k • written 19 months ago by ▴ 30
0
votes
3
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1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.2 years ago by • 0
2
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5
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1.4k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR RNASeq RNASeqData Bioconductor
written 14 months ago by • 0
0
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2
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1.3k
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Conducting pair-wise comparison in DESeq2?
DESeq2 deseq2 biocondu Bioconductor RNASeq
written 14 months ago by • 0
2
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3
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1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.5 years ago • updated 5 months ago Konstantinos Yeles ▴ 80
0
votes
1
reply
1.2k
views
News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
written 14 months ago by ▴ 70
3
votes
5
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1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
0
votes
2
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1.1k
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Bioconductor version cannot be validated
Bioconductor
updated 5 months ago by • 0 • written 7 months ago by • 0
1
vote
1
reply
1.0k
views
News: Nominations for Bioconductor 2022 Awards!
Bioc2022 Awards Bioconductor Recognition
written 2.1 years ago by 3.8k
0
votes
0
replies
1.0k
views
News: Join the Technical Advisory Board
Bioconductor News Organization
11 months ago Maria Doyle ▴ 70
0
votes
5
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949
views
What to whitelist in Firewall to allow downloading packages
Bioconductor NetworkInference
updated 9 months ago by 3.8k • written 9 months ago by • 0
6
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11
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925
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Packages don't update, but no error or warning is thrown
Bioconductor
12 weeks ago • updated 9 weeks ago gernophil • 0
2
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11
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912
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Error MakeOrgPackagefromNCBI
Bioconductor
updated 11 weeks ago by ★ 3.9k • written 6 months ago by • 0
0
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2
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906
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MACS2 not installing
Bioconductor
7 months ago alia.sinqua • 0
0
votes
2
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898
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Problem for loading Bioconductor package in R
Bioconductor
written 4.2 years ago by • 0
0
votes
2
replies
850
views
News: List of Deprecated Packages for Bioc3.17
Bioconductor Deprecation Devel devel
12 months ago • updated 10 months ago shepherl 3.8k
0
votes
1
reply
849
views
Potential segfault bug in featureCounts using long read data
Bioconductor Rsubread featureCounts
updated 11 months ago by ★ 3.6k • written 12 months ago by • 0
2
votes
1
reply
836
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 6 months ago by 50k • written 6 months ago by • 0
0
votes
6
replies
824
views
Merge 2 accounts, or delete 1 account.
Bioconductor ALL
11 months ago • updated 10 months ago simone.tiberi • 0
0
votes
2
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767
views
Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 8 months ago by 50k
0
votes
2
replies
760
views
GenomicRanges coult not be loaded after R upgrade
DESeq2 Bioconductor GenomicRanges
updated 11 months ago by • 0 • written 12 months ago by • 0
1
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4
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735
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
8 months ago patrick.turko • 0
0
votes
4
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732
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problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
11 months ago sreeshmaraj72 • 0
5
votes
2
replies
723
views
ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
7 months ago Federico ▴ 10
1
vote
1
reply
702
views
News: Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor CAB bioconductoroversight community
written 16 months ago by 3.8k
0
votes
4
replies
694
views
Bioconductor installation
Bioconductor
written 3 months ago by • 0
0
votes
0
replies
689
views
package ‘riboSeqR’ is not available for this version of R
Bioconductor riboSeqR
12 months ago Javier • 0
1
vote
2
replies
648
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 8 months ago by 65k • written 8 months ago by ▴ 10
0
votes
2
replies
620
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 7 months ago by 65k • written 7 months ago by • 0
0
votes
0
replies
609
views
NAs in tabular output from DNAcopy
Bioconductor DNAcopy
7 months ago NewtoBioconductor • 0
0
votes
1
reply
594
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 9 months ago by ★ 6.5k • written 9 months ago by • 0
2
votes
4
replies
589
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 5 months ago by 3.8k • written 5 months ago by • 0
0
votes
0
replies
585
views
News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
12 months ago shepherl 3.8k
0
votes
0
replies
575
views
News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor Event Community Training
11 months ago Maria Doyle ▴ 70
1
vote
0
replies
565
views
News: Last Week to Nominate for Bioc2023 Awards!
Bioconductor Bioc2023 Recognition Awards
11 months ago shepherl 3.8k
0
votes
3
replies
533
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
5 months ago blessybo • 0
0
votes
0
replies
527
views
News: Bioconductor Community Engagement, Outreach, and Diversity Award
Awards Bioconductor Bioc2023 Recognition
12 months ago • updated 11 months ago shepherl 3.8k
0
votes
0
replies
523
views
News: Bioconductor Long-term Contribution Award
Bioc2023 Bioconductor Awards Recognition
11 months ago shepherl 3.8k
0
votes
0
replies
523
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor Network RNASeqData SystemsBiology
9 months ago info ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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