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bioconductor
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6
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11
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787
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Packages don't update, but no error or warning is thrown
Bioconductor
8 weeks ago • updated 5 weeks ago
gernophil
• 0
5
votes
1
reply
384
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 5 months ago by
shepherl
3.8k
5
votes
2
replies
624
views
ComBat_seq function in sva package does not return a matrix
sva
ComBat
ComBat-seq
Bioconductor
ComBat_seq
6 months ago
Federico
▴ 10
5
votes
18
replies
7.3k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor
Install
DESeq2
updated 3 months ago by
picasa1983
• 0 • written 2.2 years ago by
Victor
• 0
4
votes
10
replies
1.7k
views
Archives prior to 3.15 gone
archive
bioconductor
updated 5 months ago by
shepherl
3.8k • written 18 months ago by
Florian Finkernagel
▴ 30
4
votes
3
replies
284
views
Bioconductor code browser time out
Bioconductor
updated 11 weeks ago by
Mike Smith
★ 6.5k • written 11 weeks ago by
Marek Gierlinski
▴ 30
3
votes
5
replies
1.0k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 8 months ago by
Vincent J. Carey, Jr.
6.7k • written 8 months ago by
Ndimensional
▴ 20
3
votes
15
replies
2.6k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
9 months ago • updated 11 days ago
shepherl
3.8k
3
votes
1
reply
250
views
News:
Bioconductor.org has a new look!
Bioconductor
Website
written 12 weeks ago by
shepherl
3.8k
2
votes
2
replies
259
views
How to contact Bioconductor's test host?
Bioconductor
updated 10 weeks ago by
Hervé Pagès
16k • written 10 weeks ago by
Marek Gierlinski
▴ 30
2
votes
4
replies
3.7k
views
How to convert large gene counts data into matrix?
R
Bioconductor
singlecell
bioinformatics
seurat
updated 6 weeks ago by
Gordon Smyth
50k • written 4.7 years ago by
sambunga094
• 0
2
votes
1
reply
786
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor
biocon
limma
updated 5 months ago by
Gordon Smyth
50k • written 5 months ago by
ningyuan
• 0
2
votes
1
reply
220
views
News:
"Edit" button not working
Bioconductor
Website
SupportSite
updated 8 weeks ago by
Lori
• 0 • written 10 weeks ago by
shepherl
3.8k
2
votes
0
replies
439
views
News:
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Bioconductor
4 months ago
Maria Doyle
▴ 70
2
votes
0
replies
176
views
News:
Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
6 weeks ago
Maria Doyle
▴ 70
2
votes
11
replies
820
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 7 weeks ago by
Guido Hooiveld
★ 3.9k • written 5 months ago by
cinzia.spagnoli
• 0
2
votes
3
replies
1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor
merge data frames
combine
biocgenerics
8.4 years ago • updated 5 months ago
Konstantinos Yeles
▴ 80
2
votes
5
replies
1.3k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR
RNASeq
RNASeqData
Bioconductor
written 13 months ago by
Rebekah
• 0
2
votes
4
replies
528
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor
PackageType
BiocStyle
updated 4 months ago by
shepherl
3.8k • written 4 months ago by
lavanilla44
• 0
1
vote
4
replies
680
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
7 months ago
patrick.turko
• 0
1
vote
4
replies
350
views
Can't post a question containing code?
Bioconductor
updated 6 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 6 weeks ago by
DS
▴ 10
1
vote
0
replies
215
views
News:
Nominations for Bioconductor Awards 2024!
Recognition
Awards
Bioconductor
Bioc2024
5 weeks ago • updated 24 days ago
shepherl
3.8k
1
vote
2
replies
603
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor
biocondu
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Ashton
▴ 10
1
vote
1
reply
1.0k
views
News:
Nominations for Bioconductor 2022 Awards!
Bioc2022
Awards
Bioconductor
Recognition
written 2.0 years ago by
shepherl
3.8k
1
vote
13
replies
10k
views
unable to access index for repository
Bioconductor
ConsensusClusterPlus
updated 7 months ago by
Mehdi
• 0 • written 15 months ago by
k.wickstrom
• 0
1
vote
1
reply
677
views
News:
Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor
CAB
bioconductoroversight
community
written 15 months ago by
shepherl
3.8k
1
vote
5
replies
2.1k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.1 years ago by
chandlerjd58
▴ 10
1
vote
0
replies
476
views
News:
Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
Training
Bioconductor
Event
Community
News
11 months ago
Maria Doyle
▴ 70
1
vote
0
replies
336
views
News:
Bioconductor Website Redesign - We Need Your Input!
Bioconductor
Website
9 months ago
shepherl
3.8k
1
vote
3
replies
1.0k
views
how to add an enrichment score to a kegg pathway enrichment analysis?
KEGG
clusterProfiler
Bioconductor
updated 11 months ago by
Guido Hooiveld
★ 3.9k • written 11 months ago by
m-bihie
▴ 10
1
vote
2
replies
188
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq
Bioconductor
rtracklayer
22 days ago • updated 21 days ago
thomas
• 0
1
vote
0
replies
547
views
News:
Last Week to Nominate for Bioc2023 Awards!
Bioconductor
Bioc2023
Recognition
Awards
10 months ago
shepherl
3.8k
0
votes
2
replies
553
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor
clusterProfiler
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
nilanjanamani88
• 0
0
votes
1
reply
3.0k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
Aytaç
• 0
0
votes
0
replies
410
views
News:
Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor
BioC2023
Conference
8 months ago
Maria Doyle
▴ 70
0
votes
2
replies
827
views
MACS2 not installing
Bioconductor
6 months ago
alia.sinqua
• 0
0
votes
0
replies
553
views
News:
RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor
Event
Community
Training
11 months ago
Maria Doyle
▴ 70
0
votes
8
replies
8.2k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 4 months ago by
Marcel Ramos
690 • written 2.6 years ago by
charlotte
▴ 10
0
votes
6
replies
2.0k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 4 months ago by
ATpoint
★ 4.0k • written 16 months ago by
laujihen
• 0
0
votes
6
replies
796
views
Merge 2 accounts, or delete 1 account.
Bioconductor
ALL
10 months ago • updated 9 months ago
simone.tiberi
• 0
0
votes
2
replies
1.2k
views
Conducting pair-wise comparison in DESeq2?
DESeq2
deseq2
biocondu
Bioconductor
RNASeq
written 13 months ago by
Hussain
• 0
0
votes
1
reply
1.1k
views
News:
BioC2023 abstract submission is now open!
presentation
BioC2023
Conference
community
Bioconductor
written 13 months ago by
Maria Doyle
▴ 70
0
votes
2
replies
2.1k
views
vmatchPattern on DNAstring set
Bioconductor
8 months ago
Avner
• 0
0
votes
0
replies
326
views
News:
May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor
Awards
Bioc2023
Recognition
10 months ago
shepherl
3.8k
0
votes
0
replies
199
views
Normalising processed Proteomics data in R
Bioconductor
Proteomics
4 months ago
Joshua
• 0
0
votes
0
replies
1.0k
views
News:
Join the Technical Advisory Board
Bioconductor
News
Organization
10 months ago
Maria Doyle
▴ 70
0
votes
0
replies
439
views
News:
Junior Developer or New Package Developer Award
Bioconductor
Recognition
Bioc2023
Awards
10 months ago
shepherl
3.8k
0
votes
1
reply
455
views
BiocManager Package installs
Bioconductor
updated 9 months ago by
shepherl
3.8k • written 10 months ago by
joseph.cerra
• 0
0
votes
0
replies
117
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
6 weeks ago
Maria Doyle
▴ 70
0
votes
0
replies
468
views
News:
Nominations for Bioconductor 2023 Awards!
Awards
Bioconductor
Bioc2023
Recognition
11 months ago • updated 10 months ago
shepherl
3.8k
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Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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