Bioconductor Biocstyle

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biocstyle vignettes build/check error latex

updated 7.3 years ago by Andrzej Oleś ▴ 750 • written 7.3 years ago by Mattia ▴ 10

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Glimma BiocStyle

updated 21 months ago by Mike Smith ★ 6.5k • written 21 months ago by neilzhao ▴ 30

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biocstyle

updated 7.5 years ago by James W. MacDonald 65k • written 7.5 years ago by ioannis.vardaxis ▴ 30

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Bioconductor PackageType BiocStyle

updated 5 months ago by shepherl 3.8k • written 5 months ago by lavanilla44 • 0

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package not available (for R version 3.5.0) BiocStyle

updated 5.9 years ago by Mike Smith ★ 6.5k • written 5.9 years ago by nereidaramirez • 0

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BiocStyle vignettes rmarkdown latex News

6.7 years ago Andrzej Oleś ▴ 750

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biocstyle plotly ggplot2

updated 6.8 years ago by Andrzej Oleś ▴ 750 • written 6.8 years ago by Lluís Revilla Sancho ▴ 730

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biocstyle float

updated 6.5 years ago by Andrzej Oleś ▴ 750 • written 6.5 years ago by Lescai, Francesco ▴ 380

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biocstyle

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by kevin.rue ▴ 350

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BiocStyle

updated 9.0 years ago by Andrzej Oleś ▴ 750 • written 9.0 years ago by Guangchuang Yu ★ 1.2k

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biocstyle vignette

updated 6.7 years ago by Andrzej Oleś ▴ 750 • written 6.8 years ago by Aaron Lun ★ 28k

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BiocStyle

2.5 years ago ullrich ▴ 20

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BiocStyle latex

3.8 years ago Freek Manders • 0

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BiocStyle

updated 3.6 years ago by Mike Smith ★ 6.5k • written 3.6 years ago by federico.nichetti ▴ 10

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1.1k

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biocstyle

updated 7.7 years ago by Andrzej Oleś ▴ 750 • written 7.7 years ago by kevin.rue ▴ 350

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biocstyle Rmarkdown Tutorial

6.7 years ago Wolfgang Huber ★ 13k

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Comment: DESeq2 setting significant p-value by Dev • 0

after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by jacques.imbert • 0

Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.

Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

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Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

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