Bioconductor Biocstyle

Showing : biocstyle • reset

votes

replies

3.1k

views

BiocStyle vignettes rmarkdown latex News

6.7 years ago Andrzej Oleś ▴ 750

votes

replies

1.3k

views

Glimma BiocStyle

updated 21 months ago by Mike Smith ★ 6.5k • written 21 months ago by neilzhao ▴ 30

votes

replies

1.3k

views

biocstyle vignette

updated 6.8 years ago by Andrzej Oleś ▴ 750 • written 6.8 years ago by Aaron Lun ★ 28k

votes

3.2k

views

biocstyle Rmarkdown Tutorial

6.8 years ago Wolfgang Huber ★ 13k

votes

replies

1.5k

views

biocstyle plotly ggplot2

updated 6.8 years ago by Andrzej Oleś ▴ 750 • written 6.8 years ago by Lluís Revilla Sancho ▴ 730

votes

replies

2.8k

views

biocstyle

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by kevin.rue ▴ 350

votes

replies

1.6k

views

biocstyle

updated 7.5 years ago by James W. MacDonald 65k • written 7.5 years ago by ioannis.vardaxis ▴ 30

votes

replies

739

views

BiocStyle

2.5 years ago ullrich ▴ 20

votes

1.1k

views

biocstyle

updated 7.7 years ago by Andrzej Oleś ▴ 750 • written 7.7 years ago by kevin.rue ▴ 350

votes

replies

1.7k

views

BiocStyle

updated 9.1 years ago by Andrzej Oleś ▴ 750 • written 9.1 years ago by Guangchuang Yu ★ 1.2k

votes

replies

589

views

Bioconductor PackageType BiocStyle

updated 5 months ago by shepherl 3.8k • written 5 months ago by lavanilla44 • 0

vote

replies

4.5k

views

package not available (for R version 3.5.0) BiocStyle

updated 5.9 years ago by Mike Smith ★ 6.5k • written 5.9 years ago by nereidaramirez • 0

vote

replies

3.0k

views

biocstyle vignettes build/check error latex

updated 7.4 years ago by Andrzej Oleś ▴ 750 • written 7.4 years ago by Mattia ▴ 10

vote

781

views

BiocStyle

updated 3.6 years ago by Mike Smith ★ 6.5k • written 3.6 years ago by federico.nichetti ▴ 10

votes

replies

1.8k

views

biocstyle float

updated 6.5 years ago by Andrzej Oleś ▴ 750 • written 6.5 years ago by Lescai, Francesco ▴ 380

votes

992

views

BiocStyle latex

3.9 years ago Freek Manders • 0

16 results • Page 1 of 1

Recent ...

Replies

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0