Bioconductor Biocstyle

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package not available (for R version 3.5.0) BiocStyle

updated 5.9 years ago by Mike Smith ★ 6.5k • written 5.9 years ago by nereidaramirez • 0

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biocstyle Rmarkdown Tutorial

6.7 years ago Wolfgang Huber ★ 13k

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BiocStyle vignettes rmarkdown latex News

6.7 years ago Andrzej Oleś ▴ 750

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biocstyle vignettes build/check error latex

updated 7.3 years ago by Andrzej Oleś ▴ 750 • written 7.4 years ago by Mattia ▴ 10

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biocstyle

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by kevin.rue ▴ 350

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biocstyle float

updated 6.5 years ago by Andrzej Oleś ▴ 750 • written 6.5 years ago by Lescai, Francesco ▴ 380

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BiocStyle

updated 9.0 years ago by Andrzej Oleś ▴ 750 • written 9.0 years ago by Guangchuang Yu ★ 1.2k

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biocstyle

updated 7.5 years ago by James W. MacDonald 65k • written 7.5 years ago by ioannis.vardaxis ▴ 30

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biocstyle plotly ggplot2

updated 6.8 years ago by Andrzej Oleś ▴ 750 • written 6.8 years ago by Lluís Revilla Sancho ▴ 730

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Glimma BiocStyle

updated 21 months ago by Mike Smith ★ 6.5k • written 21 months ago by neilzhao ▴ 30

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biocstyle vignette

updated 6.8 years ago by Andrzej Oleś ▴ 750 • written 6.8 years ago by Aaron Lun ★ 28k

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biocstyle

updated 7.7 years ago by Andrzej Oleś ▴ 750 • written 7.7 years ago by kevin.rue ▴ 350

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991

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BiocStyle latex

3.9 years ago Freek Manders • 0

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780

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BiocStyle

updated 3.6 years ago by Mike Smith ★ 6.5k • written 3.6 years ago by federico.nichetti ▴ 10

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739

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BiocStyle

2.5 years ago ullrich ▴ 20

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585

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Bioconductor PackageType BiocStyle

updated 5 months ago by shepherl 3.8k • written 5 months ago by lavanilla44 • 0

16 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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