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biocviews
•
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0
votes
5
replies
1.8k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
10.4 years ago • updated 10.3 years ago
Thomas Girke
★ 1.7k
0
votes
4
replies
4.3k
views
An error in oligo: All the CEL files must be of the same type??
BiocViews
Annotation
Organism
biocViews
oligo
BiocViews
BiocViews
Annotation
Organism
updated 12.9 years ago by
Benilton Carvalho
★ 4.3k • written 12.9 years ago by
Setsuko Sahara
▴ 20
0
votes
4
replies
1.5k
views
Passing multiple files to pdInfobuilder
BiocViews
biocViews
pdInfoBuilder
BiocViews
BiocViews
biocViews
pdInfoBuilder
updated 11.5 years ago by
Benilton Carvalho
▴ 50 • written 11.5 years ago by
Guest User
★ 13k
2
votes
4
replies
2.6k
views
makePdInfoPackage for Primeview arrays
BiocViews
Annotation
Cancer
Organism
cdf
probe
affy
biocViews
BiocViews
BiocViews
Cancer
updated 10.8 years ago by
cstrato
★ 3.9k • written 10.8 years ago by
Max Kauer
▴ 140
0
votes
3
replies
1.3k
views
inquiry for CDF file
BiocViews
biocViews
pdInfoBuilder
BiocViews
BiocViews
biocViews
pdInfoBuilder
15.6 years ago
Rob Dunne
▴ 230
0
votes
3
replies
1.0k
views
qvalues installation
biocViews
3.2 years ago
jdorgan
• 0
0
votes
3
replies
1.4k
views
pd.mapping 10Karray
BiocViews
cdf
affyio
biocViews
oligo
pdInfoBuilder
BufferedMatrix
BiocViews
BiocViews
cdf
updated 16.7 years ago by
Seth Falcon
★ 7.4k • written 16.7 years ago by
Marianne Tuefferd
▴ 10
1
vote
3
replies
2.4k
views
Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
BiocViews
BiocViews
Annotation
updated 9.6 years ago by
James W. MacDonald
65k • written 9.7 years ago by
Guilherme Rocha
▴ 40
0
votes
2
replies
3.8k
views
Bioconductor 2.12 is released
BiocViews
aCGH
SNP
Transcription
Sequencing
Microarray
Coverage
Alignment
Annotation
GO
updated 8.8 years ago by
marksteve952
• 0 • written 11.0 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.8k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews
Annotation
Organism
biocViews
oligo
oligoClasses
BiocViews
BiocViews
Annotation
updated 8.9 years ago by
Jason Hubbard
▴ 20 • written 10.2 years ago by
Guilherme Rocha
▴ 40
0
votes
2
replies
1.3k
views
oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
BiocViews
Organism
biocViews
oligo
pdInfoBuilder
BiocViews
BiocViews
Organism
biocViews
updated 12.1 years ago by
Benilton Carvalho
★ 4.3k • written 12.1 years ago by
Guest User
★ 13k
0
votes
1
reply
1.7k
views
confusion about nomenclature of illumina annotation packages
BiocViews
annotate
biocViews
BiocViews
BiocViews
annotate
biocViews
updated 15.8 years ago by
Lynn Amon
▴ 280 • written 15.8 years ago by
Christian Kohler
▴ 130
0
votes
1
reply
2.0k
views
Affymetrix HTA 2 array analysis
BiocViews
Annotation
Cancer
Breast
Organism
PROcess
biocViews
pdInfoBuilder
BiocViews
updated 10.4 years ago by
Benilton Carvalho
★ 4.3k • written 10.4 years ago by
Stephen Turner
▴ 290
1
vote
1
reply
1.1k
views
How to suggest BiocViews tags for an existing package?
biocviews
champ
8.6 years ago
Peter Hickey
▴ 740
0
votes
1
reply
1.2k
views
Question about sumbition process and biocviews
biocviews
biocparallel
github
package submission
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
ioannis.vardaxis
▴ 30
0
votes
1
reply
913
views
getting a list of packages by biocView tags
BiocViews
biocViews
BiocViews
BiocViews
biocViews
updated 17.9 years ago by
Seth Falcon
★ 7.4k • written 17.9 years ago by
Roels, Steven
▴ 50
0
votes
1
reply
1.6k
views
Affy Gene ST arrays with "oligo"
BiocViews
Annotation
Organism
affy
PROcess
biocViews
BiocViews
BiocViews
Annotation
affy
updated 14.9 years ago by
cstrato
★ 3.9k • written 14.9 years ago by
Cei Abreu-Goodger
▴ 830
0
votes
1
reply
1.4k
views
makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : , bind.data must have non-zero dimensions
BiocViews
Annotation
Organism
biocViews
BiocViews
BiocViews
Annotation
Organism
biocViews
updated 12.2 years ago by
Benilton Carvalho
★ 4.3k • written 12.2 years ago by
mabawsa
▴ 20
0
votes
1
reply
1.3k
views
AnnotationDbi: NewSchema vignette error
BiocViews
miRNA
Annotation
Cancer
Organism
biocViews
AnnotationDbi
BiocViews
BiocViews
updated 11.8 years ago by
Marc Carlson
★ 7.2k • written 11.8 years ago by
Mark Cowley
▴ 910
0
votes
1
reply
1.5k
views
error fix.by(by.x, x) in Pdinfobuilder package
BiocViews
Microarray
Annotation
Organism
biocViews
BiocViews
BiocViews
Microarray
Organism
updated 13.5 years ago by
Benilton Carvalho
★ 4.3k • written 13.5 years ago by
Michael MOZAR
▴ 60
0
votes
1
reply
977
views
error while using oligo to build a custom affy cdf
BiocViews
cdf
affy
biocViews
BiocViews
BiocViews
cdf
affy
biocViews
updated 15.5 years ago by
James W. MacDonald
65k • written 15.5 years ago by
Mark W Kimpel
▴ 830
0
votes
0
replies
985
views
makeOrgPackageFromNCBI another error - reversed commands
BiocViews
GO
Organism
ChipName
biocViews
BiocViews
BiocViews
GO
Organism
ChipName
12.1 years ago
Guest User
★ 13k
0
votes
0
replies
1.2k
views
confusion about nomenclature of illumina annotationpackages
BiocViews
Annotation
Cancer
Mus musculus
illuminaHumanv1
illuminaHumanv2
probe
annotate
15.8 years ago
Lynn Amon
▴ 280
0
votes
0
replies
1.3k
views
Bioconductor 1.8 for R 2.3.0 is released!
BiocViews
aCGH
SNP
Microarray
Annotation
GO
Clustering
Cancer
Yeast
cdf
probe
RMAGEML
18.0 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
1.3k
views
Sc03b_MR_v04 CDF package
BiocViews
Genetics
Yeast
cdf
probe
affy
affxparser
biocViews
oligo
pdInfoBuilder
Yeast
15.6 years ago
Ludo Muller
▴ 50
0
votes
0
replies
952
views
Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews
Genetics
Annotation
GO
Organism
biocViews
AnnotationDbi
BiocViews
BiocViews
GO
13.9 years ago
Julian Lee
▴ 10
0
votes
0
replies
1.1k
views
Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews
Genetics
Annotation
GO
Organism
probe
biocViews
AnnotationDbi
BiocViews
GO
13.9 years ago
Marc Carlson
★ 7.2k
0
votes
0
replies
1.4k
views
Bioconductor 2.7 is released
BiocViews
aCGH
Transcription
RNASeq
miRNA
Microarray
Normalization
Network
Bayesian
aCGH
13.5 years ago
Martin Morgan
25k
0
votes
0
replies
1.4k
views
Using pdInfoBuilder for Human Exon Array
BiocViews
Annotation
Organism
cdf
biocViews
oligo
pdInfoBuilder
BiocViews
BiocViews
cdf
12.8 years ago
Maria Rodrigo-Domingo / Region Nordjyll…
▴ 10
0
votes
0
replies
1.3k
views
BioC 1.9 is released!
BiocViews
SNP
Microarray
Annotation
Normalization
Visualization
Network
Infrastructure
SNP
17.5 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
1.3k
views
Nimblegen promoter medip array platform design file problem
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
charm
BiocViews
BiocViews
Annotation
12.0 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
1.2k
views
Nimblegen promoter medip array platform design file problem
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
charm
BiocViews
BiocViews
Annotation
12.0 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
3.1k
views
Bioconductor 2.11 is released
BiocViews
SNP
Transcription
Sequencing
miRNA
Microbiome
Microarray
qPCR
Genetics
Coverage
11.5 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
4.0k
views
Bioconductor 2.14 is released
BiocViews
aCGH
SNP
Sequencing
RNASeq
ChIPSeq
miRNA
Microarray
qPCR
Metabolomics
Coverage
10.0 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
4.0k
views
Bioconductor 2.13 is released
BiocViews
aCGH
SNP
Transcription
Sequencing
miRNA
Microarray
Genetics
Proteomics
Coverage
10.5 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
3.4k
views
Affymetrix HTA 2 array analysis
BiocViews
Annotation
Cancer
Breast
Organism
PROcess
biocViews
pdInfoBuilder
BiocViews
10.2 years ago
Elena Serrano
▴ 30
0
votes
0
replies
2.1k
views
Affymetrix HTA 2 array analysis
BiocViews
Annotation
Cancer
Breast
Organism
PROcess
biocViews
pdInfoBuilder
BiocViews
10.0 years ago
Elena Serrano
▴ 30
37 results • Page
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• 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
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• 0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
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by
jacques.imbert
• 0
Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.
Comment: Error in champ.load(): The following specified files do not exist
by
Basti
▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
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by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Votes
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
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