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How to convert large gene counts data into matrix?
R Bioconductor singlecell bioinformatics seurat
updated 10 weeks ago by 50k • written 4.7 years ago by • 0
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Job: Openings for Doctoral Researchers at the University of Helsinki
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6 months ago • updated 5 months ago Belinda • 0
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How to extract / pull out each row(a.k.a, single genome interval ) from given bed files by row by row for meta analysis?
r bioinformatics peakset
updated 12 months ago by • 0 • written 8.3 years ago by ▴ 80
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Job: Senior Bioinformatics/Senior Data Science Analyst
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14 months ago marisona.almazan • 0
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 14 months ago by 41k • written 5.4 years ago by • 0
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Job: Bioinformatics Analyst I, Frederick National Laboratory for Cancer Research - Hybrid Remote/Onsite
bioinformatics
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Job: Four Openings for Doctoral Researchers at the University of Helsinki
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15 months ago bram.berntzen • 0
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abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 16 months ago by • 0
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
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17 months ago DKFZ International PhD Program ▴ 10
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Microbiome 16S amplicon analysis in dada2
bioinformatics DADA2
20 months ago anasjamshed1994 • 0
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
21 months ago Andy Lynch ▴ 120
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About normalization of the datasets from Harmonized TCGA data
TCGAbiolinks Proteomics GENOMICS bioinformatics
21 months ago qiz218591 • 0
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
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2.0 years ago DKFZ International PhD Program ▴ 10
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Job: Bioinformatics scientist (Full-time/Permanent) for the analysis of multiomics data in oncology
clinical R bioinformatics multiomics oncology
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Job: Job opening - Data Scientist II - Fred Hutchinson Cancer Research Center
bioinformatics opening cancerresearch biostatistics research
2.1 years ago Fred Hutch (Recruiting) ▴ 40
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How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
2.2 years ago Hasan Alanya • 0
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Job: Tenure-track Group Leader Positions in Computational Biology and Biological Chemistry
bioinformatics genomics proteomics biologicalchemistry sequencing
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Job: International PhD rotation students at FIMM-EMBL/DSHealth (University of Helsinki) in Molecular Medicine, Genomics, Bioinformatics, Neuroscience, Com…
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2.3 years ago Alyce • 0
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Job: Bioinformatician/Bioinformatics position, IMB Mainz, Germany
bioinformatics job germany
2.4 years ago sergisayolspuig ▴ 80
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Job: Research Scientist/Senior Research Scientist - National Center for Supercomputing Applications, Univ. of Illinois
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Job: Bioinformatics scientist (Full-time/Permanent) for the analysis of multiomics data in oncology
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Job: Bioinformatician position at University of Texas Southwestern Medical Center
Sequencing bioinformatics
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Job: Senior/Principal Research Scientist in Computational Biology at Abbvie
Computational Bioinformatics
2.6 years ago Arch • 0
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Job: Bioinformatics Research Associate, University of Adelaide
job Job australia bioinformatician job bioinformatics
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Job: Senior Bioinformatician at AstraZeneca - Biology/Chemistry Interface and Proteomics Research (Cambridge, UK)
Omics AstraZeneca DrugDiscovery Bioinformatics
2.6 years ago Sergio Martinez Cuesta • 0
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Results Goana after edgeR pipeline
EdgeR Bioinformatics Goana
2.7 years ago Barista • 0
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Not many DE genes using glmTreat
EdgeR Bioinformatics Transcriptomics Quantseq
2.7 years ago Barista • 0
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Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
3.2 years ago Robert Castelo ★ 3.3k
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Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
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Job: Bioinformatics Core Facility staff position at IMB in Mainz, Germany
bioinformatics JobPosting germany job
3.4 years ago sergisayolspuig ▴ 80
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
3.7 years ago • updated 3.5 years ago whduke • 0
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Job: Bioinformatics Developer / Computational Biologist
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
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Job: Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics drug-discovery RNA-seq CRISPR Job
3.7 years ago yzhang • 0
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Job: Bioinformatics Core Facility staff position at IMB in Mainz, Germany
job bioinformatics germany Job
3.7 years ago sergisayolspuig ▴ 80
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Job: Permanent Bioinformatics Scientist/Senior Scientist role in a Biotech company (Cambridge UK)
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3.8 years ago suraj.menon • 0
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Job: Postdoctoral Fellow position in Computational/Statistical Epigenomics @ Moffitt Cancer Center, Tampa, FL
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3.8 years ago tengmx • 0
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Job: Post-Doctoral Research Fellow, Cancer Genomics
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3.9 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Bioinformatics Analyst/Bioinformatics Research Scientist (Van Andel Institute)
job bioinformatics research scientist analyst Job
4.1 years ago deanpett ▴ 30
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Job: Bioinformatician-Cancer Biology - Fred Hutchinson Cancer Research Center (Seattle, WA)
SEATTLE WASHINGTON WASHINGTON STATE BIOINFORMATICS COMPUTATIONAL BIOLOGY Job
4.1 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Bioinformatics Analyst I-II - Fred Hutchinson Cancer Research Center (Seattle, WA)
SEATTLE WASHINGTON STATE WASHINGTON BIOINFORMATICS Job
4.1 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
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Job: Research scientist in bioinformatics, Sweden
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Job: Bioinformatics Analyst II, Genomics Shared Resource - Fred Hutchinson Cancer Research Center, Seattle, WA
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4.5 years ago Fred Hutch (Recruiting) ▴ 40
50 results • Page 1 of 1
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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