Showing : bioinformatics • reset
4
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2
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seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?
bioinformatics paper multiple treatments biologicalreplicates
updated 7.8 years ago by 50k • written 7.8 years ago by ▴ 80
3
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0
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1.5k
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Job: PhD Positions in Computational Cancer Research
jobs bioinformatics biostatistics cancer next-generation sequencing Job
8.0 years ago Bernd Fischer ▴ 550
3
votes
4
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973
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edgeR analysis of cells treated with either drug1, drug2, or a time matched control at two different time points, did I set this up correctly?
edger rnaseq gene expression bioinformatics
updated 5.6 years ago by 50k • written 5.6 years ago by • 0
3
votes
7
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2.5k
views
How to convert bia file to tsv file
samtools bioinformatics
8.9 years ago engr.yahya602 • 0
3
votes
6
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1.9k
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Analyzing Open source PPI databases
ppi bioinformatics
updated 8.7 years ago by 25k • written 8.7 years ago by ▴ 10
3
votes
6
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1.9k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 7.0 years ago by 65k • written 7.0 years ago by ▴ 20
3
votes
8
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1.7k
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Problem with readFast5Summary in IONiseR related to HDF5
ioniser bioinformatics minion
updated 6.6 years ago by ▴ 380 • written 7.1 years ago by • 0
2
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4
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3.8k
views
How to convert large gene counts data into matrix?
R Bioconductor singlecell bioinformatics seurat
updated 10 weeks ago by 50k • written 4.7 years ago by • 0
2
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2
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962
views
Help for Research Proposal
drug development pathways bioinformatics
updated 5.4 years ago by ★ 13k • written 5.4 years ago by • 0
2
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2
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1.2k
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How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
2.2 years ago Hasan Alanya • 0
2
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0
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846
views
Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
3.6 years ago Johannes Rainer ★ 2.0k
2
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5
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1.5k
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Differential Gene Expression
deseq2 bioinformatics rna-seq Tutorial
updated 7.6 years ago by 41k • written 7.6 years ago by ▴ 10
1
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0
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1.0k
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Job: Chief Data Scientist
bioinformatics Job
7.5 years ago kaufmanm ▴ 10
1
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2
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946
views
Results Goana after edgeR pipeline
EdgeR Bioinformatics Goana
2.7 years ago Barista • 0
1
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0
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1.2k
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Job: Bioinformatician/Bioinformatics position, IMB Mainz, Germany
bioinformatics germany job Job
7.5 years ago sergisayolspuig ▴ 80
1
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0
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1.2k
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Job: Bioinformatician/Bioinformatics position, IMB Mainz, Germany
bioinformatics job germany
2.4 years ago sergisayolspuig ▴ 80
1
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0
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746
views
Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
21 months ago Andy Lynch ▴ 120
1
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0
replies
1.3k
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Job: FIMM-EMBL International PhD program now accepting applications
bioinformatics molecular medicine PhD Job
7.3 years ago gretchen.repasky ▴ 20
1
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6
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2.7k
views
DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 14 months ago by 41k • written 5.4 years ago by • 0
1
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0
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919
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Job: Bioinformatics Analyst II, Genomics Shared Resource - Fred Hutchinson Cancer Research Center, Seattle, WA
bioinformatics seattle full-time genomics Job
4.5 years ago Fred Hutch (Recruiting) ▴ 40
1
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0
replies
941
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Job: PhD Positions in Data Science and Bioinformatics at the German Cancer Research Center (DKFZ) in Heidelberg
data science bioinformatics PhD doctoral position Job
5.1 years ago DKFZ International PhD Program ▴ 10
1
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0
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878
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
3.9 years ago Fred Hutch (Recruiting) ▴ 40
1
vote
0
replies
729
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
2.0 years ago DKFZ International PhD Program ▴ 10
1
vote
0
replies
1.7k
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Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
8.4 years ago Yassen Assenov ▴ 10
1
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1
reply
1.2k
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News: Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology go ontology bioinformatics genomics News
5.6 years ago laurent.albou • 0
1
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0
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1.3k
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Job: Bioinformatician/Bioinformatics position, IMB Mainz, Germany
job bioinformatics germany Job
6.4 years ago sergisayolspuig ▴ 80
1
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2
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2.5k
views
topGO for Gene Ontology and Gene Set enrichment
topgo gene ontology gene set enrichment rna-seq bioinformatics
updated 7.3 years ago by ▴ 730 • written 7.6 years ago by ▴ 10
1
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1
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5.5k
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Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA
mfuzz clustering bioinformatics proteomics timecourse
updated 8.2 years ago by 1.6k • written 8.2 years ago by • 0
1
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2
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1.4k
views
How do i perform chi square test in r?
microarray chisquare bioconductor bioinformatics
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 10
1
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0
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1.6k
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Job: Job Opening: Computational Biologists in Cambridge, MA and NYC
ngs computational biology R genomics bioinformatics Job
8.5 years ago mmartin ▴ 20
1
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0
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1.2k
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Job: Applications are now invited for the FIMM-EMBL International PhD program
bioinformatics data science PhD Job
6.3 years ago gretchen.repasky ▴ 20
1
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5
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3.2k
views
How to convert a bam file into tsv file format?
bioinformatics
updated 8.6 years ago by 50k • written 8.6 years ago by • 0
1
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1
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1.3k
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Job: Post-doctoral mass spectrometry and proteomics bioinformatician (updated)
bioinformatics proteomics mass spectrometry job Job
6.9 years ago • updated 6.8 years ago Laurent Gatto 1.6k
1
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0
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1.7k
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Job: Call for Professors and Assistant Professors
bioinformatics computational biology Job
6.6 years ago aaistaustria ▴ 10
1
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2
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2.2k
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Job: Postdoctoral Research Fellow in Bioinformatics – Systems Biology of Childhood Cancer
bioinformatics systemsbiology cancer job austria Job
8.8 years ago • updated 8.7 years ago heinrich.kovar ▴ 10
1
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1
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1.7k
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News: New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology bioinformatics teaching master News
updated 7.8 years ago by • 0 • written 7.8 years ago by ▴ 10
1
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0
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743
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Job: Sr. Bioinformatics Scientist
job bioinformatics Job
4.9 years ago shira.rockowitz ▴ 10
1
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3
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2.1k
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Gene Ontology and Gene Set Enrichment
rna-seq bioinformatics gene ontology gene set enrichment go
updated 7.6 years ago by ★ 1.2k • written 7.6 years ago by ▴ 10
1
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0
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1.1k
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Job: Bioinformatics Position: Francis Crick Institute, London
job bioinformatics uk Job
6.9 years ago Gavin Kelly ▴ 680
1
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1.1k
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Job: Bioinformatician/Bioinformatics position, IMB Mainz, Germany
job bioinformatics germany Job
6.6 years ago sergisayolspuig ▴ 80
1
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1
reply
1.2k
views
FPKM normalization questions!
r fpkm bioinformatics
updated 7.5 years ago by ★ 28k • written 7.5 years ago by ▴ 10
1
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2
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1.3k
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Not many DE genes using glmTreat
EdgeR Bioinformatics Transcriptomics Quantseq
2.7 years ago Barista • 0
0
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0
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1.4k
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Job: Senior Postdoctoral Fellow in Computational Biology/Bioinformatics : Adelaide, Australia
postdoc bioinformatics network analysis australia systemsbiology Job
8.0 years ago david.lynn • 0
0
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0
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1.6k
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Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
8.2 years ago Hui Sun Leong ▴ 10
0
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2
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2.4k
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Job: Bioinformatics Research Associate, University of Adelaide
job Job australia bioinformatician job bioinformatics
written 8.8 years ago by ▴ 170
0
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0
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2.1k
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Job: PhD Positions in Helsinki
bioinformatics job Helsinki Finland Job
8.2 years ago Simon Anders ★ 3.7k
0
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0
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2.4k
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Job: Full position as Bioinformatician at ETH Zurich in Personalized Medicine Data Fusion and Method Implementation
bioinformatics personalized medicine genomics Job
9.5 years ago Daniel Stekhoven ▴ 10
0
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3
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1.5k
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How to extract / pull out each row(a.k.a, single genome interval ) from given bed files by row by row for meta analysis?
r bioinformatics peakset
updated 12 months ago by • 0 • written 8.3 years ago by ▴ 80
0
votes
0
replies
2.0k
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Job: Postdocs and PhD students in the areas of Bioinformatics, Biostatistics or Medical Informatics
jobs job bioinformatics R Job
8.4 years ago Frank Kramer ▴ 60
0
votes
2
replies
2.4k
views
Error in CummeRbund installation
cummerbund rnaseq bioinformatics bioconductor R
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
50 results • Page 1 of 1
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Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error by Fara • 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Votes
Answer: Gene set analysis: GSVA, Z-Score, and fold-changes
Answer: FilterByExpr low counts with small sample size
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
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